genewise output
Score 285.34 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000269_2.0    1 SKSEWQKKLTPEQFHVTREKGTEP                       PF 
                     SKSEWQKKLTPEQFHVTREKGTEP                       PF 
                     SKSEWQKKLTPEQFHVTREKGTEP                       PF 
NIVO01003597.1:50000 taagtcaacacgctcgaagagagcGTAAGCT  Intron 1   CAGct 
                     cagagaaatccaatatcgaagcac<0-----[50072:56018]-0>ct 
                     cgtggggggaaggctcgaaagagg                       tc 


SPP00000269_2.0   27 SGIYLNNKEPGMYHCVCCDSPLF                           
                     SGIYLNNKEPGMYHCVCCDSPLF                           
                     SGIYLNNKEPGMYHCVCCDSPLF           S:S[agc]        
NIVO01003597.1:56025 agatcaaagcgatctgttgacctAGGTGAGAT  Intron 2   CAGC 
                     ggtataaaacgtaagtggagctt  <2-----[56096:62599]-2>  
                     tgccgtcgaaggtctgtcccgcc                           


SPP00000269_2.0   51 SEKKFCSGTGWPSFSEAHGTSGSDESNTGILRRADTSLGPARTEVVCKQ 
                     SEKKFCSGTGWPSFSEAHGTSGSDESNTGILRRADTSLG ARTEVVCKQ 
                     SEKKFCSGTGWPSFSEAHGTSGSDESNTGILRRADTSLGLARTEVVCKQ 
NIVO01003597.1:62601 tgaatttgagtctttggcgatgtggaaagacacggattgcgcagggtac 
                     caaatgcgcggcctcacagccgcaagacgttggcacctgtcgcattgaa 
                     tgggcctcgagtgctgtcgctcttgtcggcgattccggaatcagcctgg 


SPP00000269_2.0  100                        CEAHLGHVFPDGPGPAGQRFCINSVA 
                                            CEAHLGHVFPDGPGPAGQRFCINSVA 
                                            CEAHLGHVFPDGPGPAGQRFCINSVA 
NIVO01003597.1:62748 GTGGGTG  Intron 3   CAGtggccgcgtcggcgcggcattaaagg 
                     <0-----[62748:63743]-0>gacatgattcagcgccgagtgtagtc 
                                            catctctgcctatgttgggcccctgg 


SPP00000269_2.0  126 LRFKPRK                                           
                     LRFKP+K                                           
                     LRFKPKK                                           
NIVO01003597.1:63822 catacaa                                           
                     tgtacaa                                           
                     cgcgaga                                           


//
Making a S in phase 2 intron
>NIVO01003597.1:subseq(1758744,113830).pep
SKSEWQKKLTPEQFHVTREKGTEPPFSGIYLNNKEPGMYHCVCCDSPLFSSEKKFCSGTG
WPSFSEAHGTSGSDESNTGILRRADTSLGLARTEVVCKQCEAHLGHVFPDGPGPAGQRFC
INSVALRFKPKK
//
>NIVO01003597.1:subseq(1758744,113830).[50000:63842].sp
TCCAAGAGTGAGTGGCAGAAGAAGCTGACACCAGAGCAGTTCCATGTCACGAGAGAAAAA
GGGACAGAGCCGCCTTTCAGTGGGATCTACCTGAATAACAAGGAACCAGGGATGTATCAC
TGTGTGTGTTGCGACAGCCCGCTCTTCAGCTCTGAGAAGAAGTTCTGCTCTGGCACGGGA
TGGCCTTCGTTCTCTGAGGCTCACGGGACCTCTGGCTCTGATGAGAGTAACACGGGGATC
CTGAGACGTGCTGACACCTCGTTGGGACTAGCTCGCACAGAGGTCGTCTGTAAGCAGTGC
GAAGCTCACCTTGGCCATGTGTTCCCCGATGGACCTGGGCCTGCTGGGCAGAGGTTCTGC
ATCAACAGTGTGGCGCTCAGGTTCAAGCCAAAGAAA
//
NIVO01003597.1:subseq(1758744,113830)	GeneWise	match	50000	63842	285.34	+	.	NIVO01003597.1:subseq(1758744,113830)-genewise-prediction-1
NIVO01003597.1:subseq(1758744,113830)	GeneWise	cds	50000	50071	0.00	+	0	NIVO01003597.1:subseq(1758744,113830)-genewise-prediction-1
NIVO01003597.1:subseq(1758744,113830)	GeneWise	intron	50072	56018	0.00	+	.	NIVO01003597.1:subseq(1758744,113830)-genewise-prediction-1
NIVO01003597.1:subseq(1758744,113830)	GeneWise	cds	56019	56095	0.00	+	0	NIVO01003597.1:subseq(1758744,113830)-genewise-prediction-1
NIVO01003597.1:subseq(1758744,113830)	GeneWise	intron	56096	62599	0.00	+	.	NIVO01003597.1:subseq(1758744,113830)-genewise-prediction-1
NIVO01003597.1:subseq(1758744,113830)	GeneWise	cds	62600	62747	0.00	+	1	NIVO01003597.1:subseq(1758744,113830)-genewise-prediction-1
NIVO01003597.1:subseq(1758744,113830)	GeneWise	intron	62748	63743	0.00	+	.	NIVO01003597.1:subseq(1758744,113830)-genewise-prediction-1
NIVO01003597.1:subseq(1758744,113830)	GeneWise	cds	63744	63842	0.00	+	0	NIVO01003597.1:subseq(1758744,113830)-genewise-prediction-1
//

genewise output
Score 17.73 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000269_2.0  112 PGPAGQRFCI                                        
                     PG +G+ FCI                                        
                     PGQSGESFCI                                        
NIVO01003597.1-99150 cgcaggatta                                        
                     cgaggagtgt                                        
                     gagtgatctc                                        


//
>NIVO01003597.1:subseq(1758744,113830).pep
PGQSGESFCI
//
>NIVO01003597.1:subseq(1758744,113830).[99150:99119].sp
CCGGGACAGAGTGGGGAAAGTTTCTGTATC
//
NIVO01003597.1:subseq(1758744,113830)	GeneWise	match	99150	99121	17.73	-	.	NIVO01003597.1:subseq(1758744,113830)-genewise-prediction-1
NIVO01003597.1:subseq(1758744,113830)	GeneWise	cds	99150	99121	0.00	-	0	NIVO01003597.1:subseq(1758744,113830)-genewise-prediction-1
//