Command line: [exonerate -m p2g --showtargetgff -q ../MSRB2-human.fa -t MSRB2-NIVO01003597.1.subseq]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000269_2.0 # Protein # Methionine-R-sufoxide reductase 2 (MSRB2) # Cow 
        Target: NIVO01003597.1:subseq(1758744,113830) Ammotragus lervia isolate NAZ scaffold3385_len2400928_cov71, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 703
   Query range: 0 -> 132
  Target range: 49999 -> 63842

     1 : SerLysSerGluTrpGlnLysLysLeuThrProGluGlnPheHisValThrArgGluLys :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         SerLysSerGluTrpGlnLysLysLeuThrProGluGlnPheHisValThrArgGluLys
 50000 : TCCAAGAGTGAGTGGCAGAAGAAGCTGACACCAGAGCAGTTCCATGTCACGAGAGAAAAA : 50057

    21 : GlyThrGluPro  >>>> Target Intron 1 >>>>  ProPheSerGlyIleTyrL :    31
         ||||||||||||           5947 bp           |||||||||||||||||||
         GlyThrGluPro++                         ++ProPheSerGlyIleTyrL
 50058 : GGGACAGAGCCGgt.........................agCCTTTCAGTGGGATCTACC : 56037

    32 : euAsnAsnLysGluProGlyMetTyrHisCysValCysCysAspSerProLeuPhe{Se} :    50
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||{||}
         euAsnAsnLysGluProGlyMetTyrHisCysValCysCysAspSerProLeuPhe{Se}
 56038 : TGAATAACAAGGAACCAGGGATGTATCACTGTGTGTGTTGCGACAGCCCGCTCTTC{AG} : 56094

    51 :   >>>> Target Intron 2 >>>>  {r}SerGluLysLysPheCysSerGlyThrG :    60
                    6504 bp           {|}||||||||||||||||||||||||||||
         ++                         ++{r}SerGluLysLysPheCysSerGlyThrG
 56095 : gt.........................ag{C}TCTGAGAAGAAGTTCTGCTCTGGCACGG : 62628

    61 : lyTrpProSerPheSerGluAlaHisGlyThrSerGlySerAspGluSerAsnThrGlyI :    80
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         lyTrpProSerPheSerGluAlaHisGlyThrSerGlySerAspGluSerAsnThrGlyI
 62629 : GATGGCCTTCGTTCTCTGAGGCTCACGGGACCTCTGGCTCTGATGAGAGTAACACGGGGA : 62688

    81 : leLeuArgArgAlaAspThrSerLeuGlyProAlaArgThrGluValValCysLysGln  :   100
         |||||||||||||||||||||||||||||! !||||||||||||||||||||||||||| 
         leLeuArgArgAlaAspThrSerLeuGlyLeuAlaArgThrGluValValCysLysGln+
 62689 : TCCTGAGACGTGCTGACACCTCGTTGGGACTAGCTCGCACAGAGGTCGTCTGTAAGCAGg : 62748

   101 :  >>>> Target Intron 3 >>>>  CysGluAlaHisLeuGlyHisValPheProAs :   110
                    996 bp           ||||||||||||||||||||||||||||||||
         +                         ++CysGluAlaHisLeuGlyHisValPheProAs
 62749 : t.........................agTGCGAAGCTCACCTTGGCCATGTGTTCCCCGA : 63774

   111 : pGlyProGlyProAlaGlyGlnArgPheCysIleAsnSerValAlaLeuArgPheLysPr :   130
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         pGlyProGlyProAlaGlyGlnArgPheCysIleAsnSerValAlaLeuArgPheLysPr
 63775 : TGGACCTGGGCCTGCTGGGCAGAGGTTCTGCATCAACAGTGTGGCGCTCAGGTTCAAGCC : 63834

   131 : oArgLys :   132
         |!:!|||
         oLysLys
 63835 : AAAGAAA : 63842

vulgar: SPP00000269_2.0 0 132 . NIVO01003597.1:subseq(1758744,113830) 49999 63842 + 703 M 24 72 5 0 2 I 0 5943 3 0 2 M 25 75 S 0 2 5 0 2 I 0 6500 3 0 2 S 1 1 M 49 147 5 0 2 I 0 992 3 0 2 M 33 99
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	gene	50000	63842	703	+	.	gene_id 1 ; sequence SPP00000269_2.0 ; gene_orientation +
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	cds	50000	50071	.	+	.	
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	exon	50000	50071	.	+	.	insertions 0 ; deletions 0
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	splice5	50072	50073	.	+	.	intron_id 1 ; splice_site "GT"
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	intron	50072	56018	.	+	.	intron_id 1
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	splice3	56017	56018	.	+	.	intron_id 0 ; splice_site "AG"
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	cds	56019	56095	.	+	.	
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	exon	56019	56095	.	+	.	insertions 0 ; deletions 0
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	splice5	56096	56097	.	+	.	intron_id 2 ; splice_site "GT"
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	intron	56096	62599	.	+	.	intron_id 2
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	splice3	62598	62599	.	+	.	intron_id 1 ; splice_site "AG"
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	cds	62600	62747	.	+	.	
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	exon	62600	62747	.	+	.	insertions 0 ; deletions 0
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	splice5	62748	62749	.	+	.	intron_id 3 ; splice_site "GT"
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	intron	62748	63743	.	+	.	intron_id 3
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	splice3	63742	63743	.	+	.	intron_id 2 ; splice_site "AG"
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	cds	63744	63842	.	+	.	
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	exon	63744	63842	.	+	.	insertions 0 ; deletions 0
NIVO01003597.1:subseq(1758744,113830)	exonerate:protein2genome:local	similarity	50000	63842	703	+	.	alignment_id 1 ; Query SPP00000269_2.0 ; Align 50000 1 72 ; Align 56019 25 75 ; Align 62601 51 147 ; Align 63744 100 99
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis