genewise output
Score 17.19 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000268_2.0   44 PAFTETIHADSVAKRPEH---NRPGA                        
                     P FT T+ A    +RPE     RPGA                        
                     PFFTPTMRACGKRRRPEPLATGRPGA                        
NIVO01014683.1:36655 cttacaaagtgaccccgccgagacgg                        
                     cttccctgcggagggcactccggcgc                        
                     cccgcgggccggccacgagcgcagcc                        


//
>NIVO01014683.1:subseq(1238558,102344).pep
PFFTPTMRACGKRRRPEPLATGRPGA
//
>NIVO01014683.1:subseq(1238558,102344).[36655:36732].sp
CCCTTCTTCACGCCCACGATGAGGGCCTGCGGGAAGCGCCGCCGACCCGAGCCACTGGCC
ACGGGCAGACCGGGCGCC
//
NIVO01014683.1:subseq(1238558,102344)	GeneWise	match	36655	36732	19.18	+	.	NIVO01014683.1:subseq(1238558,102344)-genewise-prediction-1
NIVO01014683.1:subseq(1238558,102344)	GeneWise	cds	36655	36732	0.00	+	0	NIVO01014683.1:subseq(1238558,102344)-genewise-prediction-1
//

genewise output
Score 230.72 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000268_2.0    1 MSFCSFFGGEIFQNHFEP                          IYVCA 
                     MSFCSFFGGEIFQNHFEP                          IYVCA 
                     MSFCSFFGGEIFQNHFEP          G:G[ggt]        IYVCA 
NIVO01014683.1-52344 atttattgggatcactgcGGTACGAT  Intron 1   CAGGTatgtg 
                     tctggttggattaaatac <1-----[52289:50594]-1>  tatgc 
                     ggcccccgcgtcgcctgg                          ccgtc 


SPP00000268_2.0   25 KCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRPGAIK      
                     KCGYELFSSRSKYAHSSPWP FTETIHADSVAKRPEHNRPGAIK      
                     KCGYELFSSRSKYAHSSPWPTFTETIHADSVAKRPEHNRPGAIK      
NIVO01014683.1-50576 atgtgcttactatgcttctcatagaacggaggaccgcaccggaa      
                     aggaattcggcaacacccgcctcactacagtcagcaaagcgcta      
                     gtctgccccccgcacgcggggccgccttctgcggagctgtacag      


SPP00000268_2.0   69                        VSCGRCGNGLGHEFLNDGPKRGQSRF 
                                            VSCGRCGNGLGHEFLNDGPKRGQSRF 
                                            VSCGRCGNGLGHEFLNDGPKRGQSRF 
NIVO01014683.1-50444 GTGGGTG  Intron 2   CAGgttgatgagcgcgtcaggcacgctct 
                     <0-----[50444:50132]-0>tcgggggagtgaattaagcaggacgt 
                                            actcgtccggccgcgctccgcagccc 


SPP00000268_2.0   95 XIFSSSLKFIPKGAFASW                                
                     XIFSSSLKFIPKGA+ASW                                
                     XIFSSSLKFIPKGALASW                                
NIVO01014683.1-50053 tataattatacaggcgtt                                
                     gttggctattcagctccg                                
                     atccccggcctatgttcg                                


//
Making a G in phase 1 intron
>NIVO01014683.1:subseq(1238558,102344).pep
MSFCSFFGGEIFQNHFEPGIYVCAKCGYELFSSRSKYAHSSPWPTFTETIHADSVAKRPE
HNRPGAIKVSCGRCGNGLGHEFLNDGPKRGQSRFXIFSSSLKFIPKGALASW
//
>NIVO01014683.1:subseq(1238558,102344).[52344:49998].sp
ATGTCGTTCTGCAGCTTCTTCGGGGGCGAGATTTTCCAGAACCACTTTGAGCCGGGTATC
TACGTGTGTGCCAAGTGTGGCTATGAGCTCTTCTCCAGCCGCTCCAAGTACGCACACTCG
TCCCCGTGGCCGACGTTCACCGAGACCATCCATGCTGACAGTGTGGCCAAGCGGCCAGAG
CACAATCGGCCTGGAGCCATAAAGGTATCCTGTGGCAGGTGTGGCAACGGGCTGGGCCAC
GAGTTCCTGAACGATGGCCCCAAGCGCGGACAGTCCCGCTTCTGAATTTTCAGCAGCTCC
TTGAAGTTCATCCCTAAAGGTGCGCTTGCTTCCTGG
//
NIVO01014683.1:subseq(1238558,102344)	GeneWise	match	52344	50000	230.72	-	.	NIVO01014683.1:subseq(1238558,102344)-genewise-prediction-1
NIVO01014683.1:subseq(1238558,102344)	GeneWise	cds	52344	52290	0.00	-	0	NIVO01014683.1:subseq(1238558,102344)-genewise-prediction-1
NIVO01014683.1:subseq(1238558,102344)	GeneWise	intron	52289	50594	0.00	-	.	NIVO01014683.1:subseq(1238558,102344)-genewise-prediction-1
NIVO01014683.1:subseq(1238558,102344)	GeneWise	cds	50593	50445	0.00	-	2	NIVO01014683.1:subseq(1238558,102344)-genewise-prediction-1
NIVO01014683.1:subseq(1238558,102344)	GeneWise	intron	50444	50132	0.00	-	.	NIVO01014683.1:subseq(1238558,102344)-genewise-prediction-1
NIVO01014683.1:subseq(1238558,102344)	GeneWise	cds	50131	50000	0.00	-	0	NIVO01014683.1:subseq(1238558,102344)-genewise-prediction-1
//