Command line: [exonerate -m p2g --showtargetgff -q ../MSRB1-human.fa -t MSRB1-NIVO01014683.1.subseq]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000268_2.0 # Protein # Methionine-R-sufoxide reductase 1 (MSRB1) # Cow 
        Target: NIVO01014683.1:subseq(1238558,102344) Ammotragus lervia isolate NAZ scaffold3917_len1934570_cov72, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 595
   Query range: 0 -> 112
  Target range: 52344 -> 49999

     1 : MetSerPheCysSerPhePheGlyGlyGluIlePheGlnAsnHisPheGluPro{G}  > :    19
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||{|}   
         MetSerPheCysSerPhePheGlyGlyGluIlePheGlnAsnHisPheGluPro{G}++ 
 52344 : ATGTCGTTCTGCAGCTTCTTCGGGGGCGAGATTTTCCAGAACCACTTTGAGCCG{G}gt. : 52287

    20 : >>> Target Intron 1 >>>>  {ly}IleTyrValCysAlaLysCysGlyTyrGlu :    29
                 1696 bp           {||}||||||||||||||||||||||||||||||
                                 ++{ly}IleTyrValCysAlaLysCysGlyTyrGlu
 52286 : ........................ag{GT}ATCTACGTGTGTGCCAAGTGTGGCTATGAG : 50564

    30 : LeuPheSerSerArgSerLysTyrAlaHisSerSerProTrpProAlaPheThrGluThr :    49
         |||||||||||||||||||||||||||||||||||||||||||||.!!||||||||||||
         LeuPheSerSerArgSerLysTyrAlaHisSerSerProTrpProThrPheThrGluThr
 50563 : CTCTTCTCCAGCCGCTCCAAGTACGCACACTCGTCCCCGTGGCCGACGTTCACCGAGACC : 50504

    50 : IleHisAlaAspSerValAlaLysArgProGluHisAsnArgProGlyAlaIleLys  > :    69
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
         IleHisAlaAspSerValAlaLysArgProGluHisAsnArgProGlyAlaIleLys++ 
 50503 : ATCCATGCTGACAGTGTGGCCAAGCGGCCAGAGCACAATCGGCCTGGAGCCATAAAGgt. : 50442

    70 : >>> Target Intron 2 >>>>  ValSerCysGlyArgCysGlyAsnGlyLeuGlyH :    80
                  313 bp           ||||||||||||||||||||||||||||||||||
                                 ++ValSerCysGlyArgCysGlyAsnGlyLeuGlyH
 50441 : ........................agGTATCCTGTGGCAGGTGTGGCAACGGGCTGGGCC : 50098

    81 : isGluPheLeuAsnAspGlyProLysArgGlyGlnSerArgPheUnkIlePheSerSerS :   100
         ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
         isGluPheLeuAsnAspGlyProLysArgGlyGlnSerArgPhe***IlePheSerSerS
 50097 : ACGAGTTCCTGAACGATGGCCCCAAGCGCGGACAGTCCCGCTTCTGAATTTTCAGCAGCT : 50038

   101 : erLeuLysPheIleProLysGlyAlaPheAlaSerTrp :   112
         ||||||||||||||||||||||||||.!!|||||||||
         erLeuLysPheIleProLysGlyAlaLeuAlaSerTrp
 50037 : CCTTGAAGTTCATCCCTAAAGGTGCGCTTGCTTCCTGG : 50000

vulgar: SPP00000268_2.0 0 112 . NIVO01014683.1:subseq(1238558,102344) 52344 49999 - 595 M 18 54 S 0 1 5 0 2 I 0 1692 3 0 2 S 1 2 M 49 147 5 0 2 I 0 309 3 0 2 M 44 132
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
NIVO01014683.1:subseq(1238558,102344)	exonerate:protein2genome:local	gene	50000	52344	595	-	.	gene_id 1 ; sequence SPP00000268_2.0 ; gene_orientation +
NIVO01014683.1:subseq(1238558,102344)	exonerate:protein2genome:local	cds	52290	52344	.	-	.	
NIVO01014683.1:subseq(1238558,102344)	exonerate:protein2genome:local	exon	52290	52344	.	-	.	insertions 0 ; deletions 0
NIVO01014683.1:subseq(1238558,102344)	exonerate:protein2genome:local	splice5	52288	52289	.	-	.	intron_id 1 ; splice_site "GT"
NIVO01014683.1:subseq(1238558,102344)	exonerate:protein2genome:local	intron	50594	52289	.	-	.	intron_id 1
NIVO01014683.1:subseq(1238558,102344)	exonerate:protein2genome:local	splice3	50594	50595	.	-	.	intron_id 0 ; splice_site "AG"
NIVO01014683.1:subseq(1238558,102344)	exonerate:protein2genome:local	cds	50445	50593	.	-	.	
NIVO01014683.1:subseq(1238558,102344)	exonerate:protein2genome:local	exon	50445	50593	.	-	.	insertions 0 ; deletions 0
NIVO01014683.1:subseq(1238558,102344)	exonerate:protein2genome:local	splice5	50443	50444	.	-	.	intron_id 2 ; splice_site "GT"
NIVO01014683.1:subseq(1238558,102344)	exonerate:protein2genome:local	intron	50132	50444	.	-	.	intron_id 2
NIVO01014683.1:subseq(1238558,102344)	exonerate:protein2genome:local	splice3	50132	50133	.	-	.	intron_id 1 ; splice_site "AG"
NIVO01014683.1:subseq(1238558,102344)	exonerate:protein2genome:local	cds	50000	50131	.	-	.	
NIVO01014683.1:subseq(1238558,102344)	exonerate:protein2genome:local	exon	50000	50131	.	-	.	insertions 0 ; deletions 0
NIVO01014683.1:subseq(1238558,102344)	exonerate:protein2genome:local	similarity	50000	52344	595	-	.	alignment_id 1 ; Query SPP00000268_2.0 ; Align 52345 1 54 ; Align 50592 20 147 ; Align 50132 69 132
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis