genewise output
Score 22.47 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000011_1.0   93 HKEFGPSHFSVLAFPCN                                 
                     HK++ PS+F +L  PC+                                 
                     HKQISPSYFFLLPSPCS                                 
NIVO01006926.1:22912 cacatcatttccctctt                                 
                     aaatccgattttcccgc                                 
                     cagtcctcctccctctt                                 


//
>NIVO01006926.1:subseq(1236792,104366).pep
HKQISPSYFFLLPSPCS
//
>NIVO01006926.1:subseq(1236792,104366).[22912:22962].sp
CACAAACAGATTTCCCCCAGTTACTTCTTTCTCCTCCCCTCTCCCTGTTCT
//
NIVO01006926.1:subseq(1236792,104366)	GeneWise	match	22912	22962	22.47	+	.	NIVO01006926.1:subseq(1236792,104366)-genewise-prediction-1
NIVO01006926.1:subseq(1236792,104366)	GeneWise	cds	22912	22962	0.00	+	0	NIVO01006926.1:subseq(1236792,104366)-genewise-prediction-1
//

genewise output
Score 419.45 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000011_1.0    1 MEPLAAYPLKCSGPRAKVFAVLLSIVLCTVTLFLLQLKFLKPKINSFYA 
                     MEPL AYPL+CSGP+AK FAVLLS++LCTV LFLLQLKFLKPKINSFY  
                     MEPLTAYPLRCSGPKAKAFAVLLSMILCTVMLFLLQLKFLKPKINSFYT 
NIVO01006926.1-54366 agccagtctattgcagagtggtctaactagactccccatcacaaaatta 
                     tactccactggcgcacactctttctttgcttttttatattacatagtac 
                     ggtcacctgatagcaagatacggtgtgcaagaccaacacaatacccttt 


SPP00000011_1.0   50 FEVKDAKGRTVSLEKYKGK                       VSLVVNV 
                     FEVKDA GR VSLEK+KGK                       V+LVVNV 
                     FEVKDANGRVVSLEKFKGK                       VALVVNV 
NIVO01006926.1-54219 tggaggagaggtcgatagaGTAAGTT  Intron 1   GAGggcggag 
                     tataacaggttctaataga<0-----[54162:53554]-0>tctttat 
                     tagatataagttgagtaca                       taatacg 


SPP00000011_1.0   76 ASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVES 
                     ASDCQLTDRNYL L+ELHKEFGP HFSVLAFPCNQFGESEPRPSKEV S 
                     ASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVS 
NIVO01006926.1-53532 gagtccagaattgccgccagtgctctagtgtctactggtgcccaagggt 
                     cgagatcagaatctaataaatgctatgttctcgaatgacacgcgaattc 
                     ttccacacatcaaggagcagtaacccccgttactgtaaggccgcgaaat 


SPP00000011_1.0  125 FARKNYGVTFPIFHKIKILGSEGEPAFRFLV                   
                     FAR N+GVTFPIFHKIKILGSE EPAFRFLV                   
                     FARNNFGVTFPIFHKIKILGSEAEPAFRFLV                   
NIVO01006926.1-53385 tgaaatggatcatcaaaacgtgggcgtatcg                   
                     tcgaatgtctcttaatattgcacacctgttt                   
                     taatccaaacccccgtgtaacaaatatattt                   


SPP00000011_1.0  156                           SSKKEPRWNFWKYLVNPEGQVVK 
                                               SSKKEPRWNFWKYLVNPEGQVVK 
                               D:D[gat]        SSKKEPRWNFWKYLVNPEGQVVK 
NIVO01006926.1-53292 GGTAAATA  Intron 2   TAGATttaagcatattatcgacggcgga 
                      <1-----[53291:50161]-1>  ccaaacggatgaattacagatta 
                                               taggaaggttggtgcctatatag 


SPP00000011_1.0  180 FWKPEEPIEVIRPDIAALVRQVIIKKKEDL                    
                      W+PEEPIEVIRP+IAAL+RQ+IIKKKEDL                    
                     SWRPEEPIEVIRPEIAALIRQMIIKKKEDL                    
NIVO01006926.1-50089 ttacggcaggaacgaggcaacaaaaaaggc                    
                     cggcaactattgcatccttgatttaaaaat                    
                     cggagactaccgtgaatgtaagtaagagta                    


//
Making a D in phase 1 intron
>NIVO01006926.1:subseq(1236792,104366).pep
MEPLTAYPLRCSGPKAKAFAVLLSMILCTVMLFLLQLKFLKPKINSFYTFEVKDANGRVV
SLEKFKGKVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSK
EVVSFARNNFGVTFPIFHKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKS
WRPEEPIEVIRPEIAALIRQMIIKKKEDL
//
>NIVO01006926.1:subseq(1236792,104366).[54366:49998].sp
ATGGAGCCTCTCACAGCCTACCCTTTGAGATGTTCAGGGCCCAAAGCAAAGGCATTTGCA
GTCTTGCTGTCTATGATTCTGTGCACAGTAATGCTATTCCTCCTACAACTCAAATTCCTA
AAACCTAAAATCAACAGCTTTTATACTTTTGAAGTGAAAGATGCAAATGGAAGAGTGGTT
TCTCTGGAAAAGTTTAAAGGCAAAGTTGCACTAGTTGTAAACGTGGCTAGTGACTGCCAA
CTCACAGACAGAAATTACTTAGCACTGCAGGAACTGCACAAAGAGTTTGGACCATTCCAC
TTCAGCGTCTTGGCTTTTCCATGCAATCAGTTTGGAGAATCGGAGCCCCGCCCGAGCAAG
GAAGTAGTATCTTTTGCAAGAAATAACTTCGGAGTAACATTCCCCATCTTCCACAAGATT
AAGATTCTAGGATCCGAAGCAGAACCTGCATTTAGATTTCTTGTTGATTCTTCAAAGAAG
GAACCAAGGTGGAATTTTTGGAAGTATCTGGTCAACCCTGAAGGTCAAGTTGTAAAGTCC
TGGAGGCCAGAGGAACCCATTGAAGTCATCAGGCCTGAGATAGCAGCTCTGATTAGACAA
ATGATTATAAAAAAGAAAGAGGATCTA
//
NIVO01006926.1:subseq(1236792,104366)	GeneWise	match	54366	50000	419.45	-	.	NIVO01006926.1:subseq(1236792,104366)-genewise-prediction-1
NIVO01006926.1:subseq(1236792,104366)	GeneWise	cds	54366	54163	0.00	-	0	NIVO01006926.1:subseq(1236792,104366)-genewise-prediction-1
NIVO01006926.1:subseq(1236792,104366)	GeneWise	intron	54162	53554	0.00	-	.	NIVO01006926.1:subseq(1236792,104366)-genewise-prediction-1
NIVO01006926.1:subseq(1236792,104366)	GeneWise	cds	53553	53292	0.00	-	0	NIVO01006926.1:subseq(1236792,104366)-genewise-prediction-1
NIVO01006926.1:subseq(1236792,104366)	GeneWise	intron	53291	50161	0.00	-	.	NIVO01006926.1:subseq(1236792,104366)-genewise-prediction-1
NIVO01006926.1:subseq(1236792,104366)	GeneWise	cds	50160	50000	0.00	-	2	NIVO01006926.1:subseq(1236792,104366)-genewise-prediction-1
//