Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q ../GPx8-human.fa -t GPx8-NIVO01006926.1.subseq]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000011_1.0 # Protein # Glutathione peroxidase 8 (GPx8) # Homo sapiens # Complete
        Target: NIVO01006926.1:subseq(1236792,104366) Ammotragus lervia isolate NAZ scaffold1541_len1980868_cov73, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 964
   Query range: 0 -> 209
  Target range: 54366 -> 49999

     1 : MetGluProLeuAlaAlaTyrProLeuLysCysSerGlyProArgAlaLysValPheAla :    20
         ||||||||||||.!!||||||||||||!:!||||||||||||!:!||||||!.!||||||
         MetGluProLeuThrAlaTyrProLeuArgCysSerGlyProLysAlaLysAlaPheAla
 54366 : ATGGAGCCTCTCACAGCCTACCCTTTGAGATGTTCAGGGCCCAAAGCAAAGGCATTTGCA : 54309

    21 : ValLeuLeuSerIleValLeuCysThrValThrLeuPheLeuLeuGlnLeuLysPheLeu :    40
         ||||||||||||!!::!!||||||||||||! !|||||||||||||||||||||||||||
         ValLeuLeuSerMetIleLeuCysThrValMetLeuPheLeuLeuGlnLeuLysPheLeu
 54308 : GTCTTGCTGTCTATGATTCTGTGCACAGTAATGCTATTCCTCCTACAACTCAAATTCCTA : 54249

    41 : LysProLysIleAsnSerPheTyrAlaPheGluValLysAspAlaLysGlyArgThrVal :    60
         ||||||||||||||||||||||||...||||||||||||||||||!!.||||||..!|||
         LysProLysIleAsnSerPheTyrThrPheGluValLysAspAlaAsnGlyArgValVal
 54248 : AAACCTAAAATCAacagcttttatacttttgaagTGAAAGATGCAAATGGAAGAGTGGTT : 54189

    61 : SerLeuGluLysTyrLysGlyLys  >>>> Target Intron 1 >>>>  ValSerL :    71
         ||||||||||||!:!|||||||||            609 bp           |||:!!|
         SerLeuGluLysPheLysGlyLys++                         ++ValAlaL
 54188 : TCTCTGGAAAAGTTTAAAGGCAAAgt.........................agGTTGCAC : 53547

    72 : euValValAsnValAlaSerAspCysGlnLeuThrAspArgAsnTyrLeuGlyLeuLysG :    91
         ||||||||||||||||||||||||||||||||||||||||||||||||||!.!|||:!!|
         euValValAsnValAlaSerAspCysGlnLeuThrAspArgAsnTyrLeuAlaLeuGlnG
 53546 : TAGTTGTAAACGTGGCTAGTGACTGCCAACTCACAGACAGAAATTACTTAGCACTGCAGG : 53487

    92 : luLeuHisLysGluPheGlyProSerHisPheSerValLeuAlaPheProCysAsnGlnP :   111
         |||||||||||||||||||||||! !||||||||||||||||||||||||||||||||||
         luLeuHisLysGluPheGlyProPheHisPheSerValLeuAlaPheProCysAsnGlnP
 53486 : AACTGCACAAAGAGTTTGGACCATTCCACTTCAGCGTCTTGGCTTTTCCATGCAATCAGT : 53427

   112 : heGlyGluSerGluProArgProSerLysGluValGluSerPheAlaArgLysAsnTyrG :   131
         |||||||||||||||||||||||||||||||||||! !||||||||||||!!.|||!:!|
         heGlyGluSerGluProArgProSerLysGluValValSerPheAlaArgAsnAsnPheG
 53426 : TTGGAGAATCGGAGCCCCGCCCGAGCAAGGAAGTAGTATCTTTTGCAAGAAATAACTTCG : 53367

   132 : lyValThrPheProIlePheHisLysIleLysIleLeuGlySerGluGlyGluProAlaP :   151
         |||||||||||||||||||||||||||||||||||||||||||||||!.!||||||||||
         lyValThrPheProIlePheHisLysIleLysIleLeuGlySerGluAlaGluProAlaP
 53366 : GAGTAACATTCCCCATCTTCCACAAGATTAAGATTCTAGGATCCGAAGCAGAACCTGCAT : 53307

   152 : heArgPheLeuVal{A}  >>>> Target Intron 2 >>>>  {sp}SerSerLysL :   160
         ||||||||||||||{|}           3131 bp           {||}||||||||||
         heArgPheLeuVal{A}++                         ++{sp}SerSerLysL
 53306 : TTAGATTTCTTGTT{G}gt.........................ag{AT}TCTTCAAAGA : 50149

   161 : ysGluProArgTrpAsnPheTrpLysTyrLeuValAsnProGluGlyGlnValValLysP :   180
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||!
         ysGluProArgTrpAsnPheTrpLysTyrLeuValAsnProGluGlyGlnValValLysS
 50148 : AGGAACCAAGGTGGAATTTTTGGAAGTATCTGGTCAACCCTGAAGGTCAAGTTGTAAAGT : 50089

   181 : heTrpLysProGluGluProIleGluValIleArgProAspIleAlaAlaLeuValArgG :   200
          !|||!:!||||||||||||||||||||||||||||||!!:||||||||||||:!!||||
         erTrpArgProGluGluProIleGluValIleArgProGluIleAlaAlaLeuIleArgG
 50088 : CCTGGAGGCCAGAGGAACCCATTGAAGTCATCAGGCCTGAGATAGCAGCTCTGATTAGAC : 50029

   201 : lnValIleIleLysLysLysGluAspLeu :   209
         ||:::||||||||||||||||||||||||
         lnMetIleIleLysLysLysGluAspLeu
 50028 : AAatgattataaaaaagaaagaggatcTA : 50000

vulgar: SPP00000011_1.0 0 209 . NIVO01006926.1:subseq(1236792,104366) 54366 49999 - 964 M 68 204 5 0 2 I 0 605 3 0 2 M 87 261 S 0 1 5 0 2 I 0 3127 3 0 2 S 1 2 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
NIVO01006926.1:subseq(1236792,104366)	exonerate:protein2genome:local	gene	50000	54366	964	-	.	gene_id 1 ; sequence SPP00000011_1.0 ; gene_orientation +
NIVO01006926.1:subseq(1236792,104366)	exonerate:protein2genome:local	cds	54163	54366	.	-	.	
NIVO01006926.1:subseq(1236792,104366)	exonerate:protein2genome:local	exon	54163	54366	.	-	.	insertions 0 ; deletions 0
NIVO01006926.1:subseq(1236792,104366)	exonerate:protein2genome:local	splice5	54161	54162	.	-	.	intron_id 1 ; splice_site "GT"
NIVO01006926.1:subseq(1236792,104366)	exonerate:protein2genome:local	intron	53554	54162	.	-	.	intron_id 1
NIVO01006926.1:subseq(1236792,104366)	exonerate:protein2genome:local	splice3	53554	53555	.	-	.	intron_id 0 ; splice_site "AG"
NIVO01006926.1:subseq(1236792,104366)	exonerate:protein2genome:local	cds	53292	53553	.	-	.	
NIVO01006926.1:subseq(1236792,104366)	exonerate:protein2genome:local	exon	53292	53553	.	-	.	insertions 0 ; deletions 0
NIVO01006926.1:subseq(1236792,104366)	exonerate:protein2genome:local	splice5	53290	53291	.	-	.	intron_id 2 ; splice_site "GT"
NIVO01006926.1:subseq(1236792,104366)	exonerate:protein2genome:local	intron	50161	53291	.	-	.	intron_id 2
NIVO01006926.1:subseq(1236792,104366)	exonerate:protein2genome:local	splice3	50161	50162	.	-	.	intron_id 1 ; splice_site "AG"
NIVO01006926.1:subseq(1236792,104366)	exonerate:protein2genome:local	cds	50000	50160	.	-	.	
NIVO01006926.1:subseq(1236792,104366)	exonerate:protein2genome:local	exon	50000	50160	.	-	.	insertions 0 ; deletions 0
NIVO01006926.1:subseq(1236792,104366)	exonerate:protein2genome:local	similarity	50000	54366	964	-	.	alignment_id 1 ; Query SPP00000011_1.0 ; Align 54367 1 204 ; Align 53554 69 261 ; Align 50159 157 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis