genewise output
Score 407.23 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000010_1.0    1 MVAATVAAAWLLLWAAACAQQEQDFYDFKAVNIRGKLVSLEKYRGS    
                     MVAA  AAAWLLL AAACA +EQDFYDFKAVNIRGKLVSLEKYRGS    
                     MVAAR-AAAWLLLAAAACAPREQDFYDFKAVNIRGKLVSLEKYRGS    
NIVO01025624.1:49943 agggc gggtcccggggtgccgcgttgtaggaacgatgtcgatcgt    
                     ttccg cccgtttccccgccgaaataatactatggattctaaaggc    
                     gggag gggggcgtggccgggggcccccgccccgcgggggggcacg    


SPP00000010_1.0   47                        VSLVVNVASECGFTDQHYRALQQLQR 
                                            VSLVVNVASECGFTDQHYRALQQLQR 
                                            VSLVVNVASECGFTDQHYRALQQLQR 
NIVO01025624.1:50078 GTGAGTG  Intron 1   CAGgtcggaggagtgtagcctcgcccccc 
                     <0-----[50078:54787]-0>tctttatcgaggtcaaaagctaatag 
                                            gcgggtgtcgcccacgctgcgggagg 


SPP00000010_1.0   73 DLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVT 
                     DLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVT 
                     DLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVT 
NIVO01025624.1:54866 gcgccctagcgtctactgccgcgaaagagatgccatagttcataaagga 
                     atgcaatattctcgaatgaaacagaaatagtcggcagtctcttgatctc 
                     cgggccctgtcccccgtcgggccccggcgttcccgctctccgtcgtccc 


SPP00000010_1.0  122 GTGAHPAFKYLA                          TSGKEPTWNFW 
                     GTGAHPAFKYL                           TSGKEPTWNFW 
                     GTGAHPAFKYLT          Q:E[gag]        TSGKEPTWNFW 
NIVO01025624.1:55013 gaggccgtatcaGGTGAGTC  Intron 2   TAGAGatgagcatatt 
                     gcgcacctaatc <1-----[55050:56741]-1>  ccgaaccgatg 
                     cttcctccgcgt                          ttgggtcgccg 


SPP00000010_1.0  146 KYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL        
                     KYLVAPDGKVVGAWDPTVSVEE+RPQ+TALVRKLIL KREDL        
                     KYLVAPDGKVVGAWDPTVSVEEIRPQVTALVRKLILKKREDL        
NIVO01025624.1:56777 atcggcggaggggtgcagtgggaaccgagcgaacacaacggt        
                     aattccagattgcgacctctaatgcatccttgatttaagaat        
                     gcggcataggaatgcacggggacgcgtagtgggccgggaaca        


//
Making a E in phase 1 intron
>NIVO01025624.1:subseq(1355707,106902).pep
MVAARAAAWLLLAAAACAPREQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTD
QHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVT
GTGAHPAFKYLTETSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQVTALVRKLIL
KKREDL
//
>NIVO01025624.1:subseq(1355707,106902).[49943:56902].sp
ATGGTGGCGGCACGGGCGGCGGCGTGGCTGCTCCTGGCTGCGGCGGCCTGCGCGCCGCGG
GAGCAGGACTTCTACGACTTCAAGGCCGTCAACATCCGGGGCAAGTTGGTGTCGCTGGAG
AAGTACCGAGGCTCGGTGTCCCTGGTGGTGAATGTGGCTAGCGAGTGCGGCTTCACAGAC
CAGCACTATCGGGCCCTGCAGCAGCTACAGCGGGACCTGGGGCCGCACCACTTCAATGTG
CTTGCCTTCCCCTGCAACCAGTTTGGCCAGCAGGAGCCCGACAGCAACAAGGAGATCGAG
AGTTTTGCCCGCCGCACGTACAGTGTCTCTTTCCCCATGTTTAGCAAGATTGCCGTCACC
GGCACTGGTGCCCACCCTGCCTTCAAGTACCTGACTGAGACTTCTGGGAAGGAGCCTACC
TGGAACTTCTGGAAGTACCTGGTGGCCCCAGATGGAAAGGTGGTAGGAGCTTGGGACCCA
ACCGTGTCGGTGGAGGAAATCAGGCCCCAGGTTACAGCGCTTGTGAGGAAGCTCATCCTG
AAGAAGCGAGAAGACTTA
//
NIVO01025624.1:subseq(1355707,106902)	GeneWise	match	49943	56902	407.23	+	.	NIVO01025624.1:subseq(1355707,106902)-genewise-prediction-1
NIVO01025624.1:subseq(1355707,106902)	GeneWise	cds	49943	50077	0.00	+	0	NIVO01025624.1:subseq(1355707,106902)-genewise-prediction-1
NIVO01025624.1:subseq(1355707,106902)	GeneWise	intron	50078	54787	0.00	+	.	NIVO01025624.1:subseq(1355707,106902)-genewise-prediction-1
NIVO01025624.1:subseq(1355707,106902)	GeneWise	cds	54788	55049	0.00	+	0	NIVO01025624.1:subseq(1355707,106902)-genewise-prediction-1
NIVO01025624.1:subseq(1355707,106902)	GeneWise	intron	55050	56741	0.00	+	.	NIVO01025624.1:subseq(1355707,106902)-genewise-prediction-1
NIVO01025624.1:subseq(1355707,106902)	GeneWise	cds	56742	56902	0.00	+	2	NIVO01025624.1:subseq(1355707,106902)-genewise-prediction-1
//

genewise output
Score 19.28 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000010_1.0   74 LGPHHFNVLAFP                                      
                     LGPHHF  L  P                                      
                     LGPHHFCPLLSP                                      
NIVO01025624.1-17750 tgcccttcttac                                      
                     tgcaatgcttgc                                      
                     atactcttagca                                      


//
>NIVO01025624.1:subseq(1355707,106902).pep
LGPHHFCPLLSP
//
>NIVO01025624.1:subseq(1355707,106902).[17750:17713].sp
TTAGGTCCACACCATTTCTGTCCTTTATTGAGCCCA
//
NIVO01025624.1:subseq(1355707,106902)	GeneWise	match	17750	17715	19.28	-	.	NIVO01025624.1:subseq(1355707,106902)-genewise-prediction-1
NIVO01025624.1:subseq(1355707,106902)	GeneWise	cds	17750	17715	0.00	-	0	NIVO01025624.1:subseq(1355707,106902)-genewise-prediction-1
//