Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q ../GPx7-human.fa -t GPx7-NIVO01025624.1.subseq]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000010_1.0 # Protein # Glutathione peroxidase 7 (GPx7) # Homo sapiens # Complete
        Target: NIVO01025624.1:subseq(1355707,106902) Ammotragus lervia isolate NAZ scaffold2655_len1692532_cov72, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 912
   Query range: 0 -> 187
  Target range: 49939 -> 56902

     1 : MetValAlaAlaThrValAlaAlaAlaTrpLeuLeuLeuTrpAlaAlaAlaCysAlaGln :    20
         :!::!!!.!|||.!!  !|||||||||||||||||||||   |||||||||||||||! !
         ValMetValAlaAlaArgAlaAlaAlaTrpLeuLeuLeuAlaAlaAlaAlaCysAlaPro
 49940 : GTCATGGTGGCGGCACGGGCGGCGGCGTGGCTGCTCCTGGCTGCGGCGGCCTGCGCGCCG : 49997

    21 : GlnGluGlnAspPheTyrAspPheLysAlaValAsnIleArgGlyLysLeuValSerLeu :    40
         !:!|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ArgGluGlnAspPheTyrAspPheLysAlaValAsnIleArgGlyLysLeuValSerLeu
 49998 : CGGGAGCAGGACTTCTACGACTTCAAGGCCGTCAACATCCGGGGCAAGTTGGTGTCGCTG : 50057

    41 : GluLysTyrArgGlySer  >>>> Target Intron 1 >>>>  ValSerLeuValV :    51
         ||||||||||||||||||           4710 bp           |||||||||||||
         GluLysTyrArgGlySer++                         ++ValSerLeuValV
 50058 : GAGAAGTACCGAGGCTCGgt.........................agGTGTCCCTGGTGG : 54800

    52 : alAsnValAlaSerGluCysGlyPheThrAspGlnHisTyrArgAlaLeuGlnGlnLeuG :    71
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         alAsnValAlaSerGluCysGlyPheThrAspGlnHisTyrArgAlaLeuGlnGlnLeuG
 54801 : TGAATGTGGCTAGCGAGTGCGGCTTCACAGACCAGCACTATCGGGCCCTGCAGCAGCTAC : 54860

    72 : lnArgAspLeuGlyProHisHisPheAsnValLeuAlaPheProCysAsnGlnPheGlyG :    91
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         lnArgAspLeuGlyProHisHisPheAsnValLeuAlaPheProCysAsnGlnPheGlyG
 54861 : AGCGGGACCTGGGGCCGCACCACTTCAATGTGCTTGCCTTCCCCTGCAACCAGTTTGGCC : 54920

    92 : lnGlnGluProAspSerAsnLysGluIleGluSerPheAlaArgArgThrTyrSerValS :   111
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         lnGlnGluProAspSerAsnLysGluIleGluSerPheAlaArgArgThrTyrSerValS
 54921 : AGCAGGAGCCCGACAGCAACAAGGAGATCGAGAGTTTTGCCCGCCGCACGTACAGTGTCT : 54980

   112 : erPheProMetPheSerLysIleAlaValThrGlyThrGlyAlaHisProAlaPheLysT :   131
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         erPheProMetPheSerLysIleAlaValThrGlyThrGlyAlaHisProAlaPheLysT
 54981 : CTTTCCCCATGTTTAGCAAGATTGCCGTCACCGGCACTGGTGCCCACCCTGCCTTCAAGT : 55040

   132 : yrLeuAla{G}  >>>> Target Intron 2 >>>>  {ln}ThrSerGlyLysGluP :   140
         |||||.!!{:}           1692 bp           {!!}||||||||||||||||
         yrLeuThr{G}++                         ++{lu}ThrSerGlyLysGluP
 55041 : ACCTGACT{G}gt.........................ag{aG}ACTTCTGGGAAGGAGC : 56759

   141 : roThrTrpAsnPheTrpLysTyrLeuValAlaProAspGlyLysValValGlyAlaTrpA :   160
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         roThrTrpAsnPheTrpLysTyrLeuValAlaProAspGlyLysValValGlyAlaTrpA
 56760 : CTACCTGGAACTTCTGGAAGTACCTGGTGGCCCCAGATGGAAAGGTGGTAGGAGCTTGGG : 56819

   161 : spProThrValSerValGluGluValArgProGlnIleThrAlaLeuValArgLysLeuI :   180
         |||||||||||||||||||||||:!!|||||||||:!!||||||||||||||||||||||
         spProThrValSerValGluGluIleArgProGlnValThrAlaLeuValArgLysLeuI
 56820 : ACCCAACCGTGTCGGTGGAGGAAATCAGGCCCCAGGTTACAGCGCTTGTGAGGAAGCTCA : 56879

   181 : leLeuLeuLysArgGluAspLeu :   187
         |||||  !|||||||||||||||
         leLeuLysLysArgGluAspLeu
 56880 : TCCTGAAGAAGCGAGAAGACTTA : 56902

vulgar: SPP00000010_1.0 0 187 . NIVO01025624.1:subseq(1355707,106902) 49939 56902 + 912 M 46 138 5 0 2 I 0 4706 3 0 2 M 87 261 S 0 1 5 0 2 I 0 1688 3 0 2 S 1 2 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
NIVO01025624.1:subseq(1355707,106902)	exonerate:protein2genome:local	gene	49940	56902	912	+	.	gene_id 1 ; sequence SPP00000010_1.0 ; gene_orientation +
NIVO01025624.1:subseq(1355707,106902)	exonerate:protein2genome:local	cds	49940	50077	.	+	.	
NIVO01025624.1:subseq(1355707,106902)	exonerate:protein2genome:local	exon	49940	50077	.	+	.	insertions 0 ; deletions 0
NIVO01025624.1:subseq(1355707,106902)	exonerate:protein2genome:local	splice5	50078	50079	.	+	.	intron_id 1 ; splice_site "GT"
NIVO01025624.1:subseq(1355707,106902)	exonerate:protein2genome:local	intron	50078	54787	.	+	.	intron_id 1
NIVO01025624.1:subseq(1355707,106902)	exonerate:protein2genome:local	splice3	54786	54787	.	+	.	intron_id 0 ; splice_site "AG"
NIVO01025624.1:subseq(1355707,106902)	exonerate:protein2genome:local	cds	54788	55049	.	+	.	
NIVO01025624.1:subseq(1355707,106902)	exonerate:protein2genome:local	exon	54788	55049	.	+	.	insertions 0 ; deletions 0
NIVO01025624.1:subseq(1355707,106902)	exonerate:protein2genome:local	splice5	55050	55051	.	+	.	intron_id 2 ; splice_site "GT"
NIVO01025624.1:subseq(1355707,106902)	exonerate:protein2genome:local	intron	55050	56741	.	+	.	intron_id 2
NIVO01025624.1:subseq(1355707,106902)	exonerate:protein2genome:local	splice3	56740	56741	.	+	.	intron_id 1 ; splice_site "ag"
NIVO01025624.1:subseq(1355707,106902)	exonerate:protein2genome:local	cds	56742	56902	.	+	.	
NIVO01025624.1:subseq(1355707,106902)	exonerate:protein2genome:local	exon	56742	56902	.	+	.	insertions 0 ; deletions 0
NIVO01025624.1:subseq(1355707,106902)	exonerate:protein2genome:local	similarity	49940	56902	912	+	.	alignment_id 1 ; Query SPP00000010_1.0 ; Align 49940 1 138 ; Align 54788 47 261 ; Align 56744 135 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis