_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-41
 Query name: gi|926722089|ref|XP_005696754.2| PREDICTED: glutathione peroxidase 6 [Capra hircus] >gi|965991328|ref|XP_004019101.2| PREDICTED: glutathione peroxidase 6 [Ovis aries]
 Query range: 1-221  (total 221)

 Target: /data/www-rg/seblastian_results/470353802/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  56640        56726
 -Exon 2  54156        54309
 -Exon 3  52208        52325
 -Exon 4  50952        51051
 -Exon 5  49997        50200

 Redox box: no

Query   MILQLWASCLFPLFLVSLAQLTPKQQQMK <---Intron---> VDCYKGVTGTIYEYGALTLNGEEYIQFKQYAGKHVLFVNVATYUGLTAQYPE <-
        ||||||||||||||||||||||||||||| <   2330bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||| < 
Target  MILQLWASCLFPLFLVSLAQLTPKQQQMK                VDCYKGVTGTIYEYGALTLNGEEYIQFKQYAGKHVLFVNVATYUGLTAQYPE   
        aaccctgttctcctcgatgccacacccaa                ggttaggagaatgtggcacagggtactactggacgctgaggattgtagctcg   
        tttatgccgttcttttgtcatccaaaata                tagaagtcgctaaagctctagaaatataaacgaattttatccaggtccaac    
        gcggcgccttcagcgccatggtgggaggg                gtctgggaccctgtaccccttggtcgcggtacgtcgtctgcctacgatgta    
                                                                                                *           

Query   --Intron---> LNALQEELKPFGVVVLGFPCNQFGKQEPAKNSEILMGLK <---Intron---> YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFL
          1830bp   > ||||||||||||||||||||||||||||||||||||||| <   1156bp   > ||||||||||||||||||||||||||||||||
Target               LNALQEELKPFGVVVLGFPCNQFGKQEPAKNSEILMGLK                YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFL
                     cagccggcactggggtgtctactgacgcgaatgacagca                tgccgggtgcatcctgagggaggagcagtatc
                    atactaaatactgttttgtcgaatgaaaccaacatttgta                atgcgggttcatattaagatagaaaaattctt
                    agtaagggggtctatggctcccataaagaagcagctggc                gtatattcttcttgctgagtgtaaaaggctccg
                                                                                                            

Query   K <---Intron---> NSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRASVSTVKSDMLEYLKQFKSE
        | <   751bp    > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  K                NSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRASVSTVKSDMLEYLKQFKSE
        a                attccatgctgttaccttgcaagcgactatgatcggcgggcgacttccgtgaagatgacgtcactaag
        a                acgccccattgccgattgactataatggataatttgcagtcttggaagcctgctacattaataataga
        g                ccctactttgcaatgccggcggctctcgctggtaggtttctcgtgccgtaccataacgggcgggcaca
                                                                                             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 485 ; UGA-SECIS: 929

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 49511 - 49436
 Found by:  Infernal (score=26.7) Covels (score=20.31)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 1
 Free Energy = -25.83
 Type = 1

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         (({(((((((--....([[(((-(((((((.................))))))).)))]])......-..)))))))}))
 target  GAGGGGCAUC--UCCAUGAUGG-UGGGUCCCAAAGGCCCUGUGGGCAGGACCCAACCAGAACCUUCC-UUGGUGCCUGUC
                         ****           ^^^                       ****