------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = - Positions = 49514 - 49439 Found by: Infernal (score=26.7) Covels (score=20.31) Stem2 length = 9 Apical loop length = 17 Insertion in stem2 = 0, 1 Free Energy = -25.83 Type = 1 ..(((((((.......(((((((((((((((...............)))))))))))))))..........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc (({(((((((--....([[(((-(((((((.................))))))).)))]])......-..)))))))})) target GAGGGGCAUC--UCCAUGAUGG-UGGGUCCCAAAGGCCCUGUGGGCAGGACCCAACCAGAACCUUCC-UUGGUGCCUGUC **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = your_sequence Strand = + Positions = 70662 - 70730 Found by: Infernal (score=14.7) Covels (score=1.76) Stem2 length = 7 Apical loop length = 11 Insertion in stem2 = 0, 0 Free Energy = -16.2 Type = 1 ..(((((((..........((((((((((((.....................))))))))))))........))))))).. model uucggucaugcg---UuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuuuuucaugaccggc ..(((({{((((.......([[{(({(((((...........----------)))))}))}]])..--.))))}})))).. target UCAGGGCCAGCUGUCUUAGUGAAGGCCCAGGGCCAGAAUCAG----------CCUGGACCAGAGGU--GAGCUUCCUCUUC **** ^^ ****