------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 51099 - 51171
 Found by:  Infernal (score=29.34) Covels (score=36.91)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -11.14
 Type = 1

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({({((((......([[{((((((((({(.....-.........)})))))))))}]])----...))))})})..
 target  CUUCCCCUGGUGCCUAUGAUGGUCUGUCUGAAAACC-AGCCCCUGGUGGGGCAGACCUGAG----AACCUGGCGUGCA
                         ****           ^^^                       ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 777336 - 777422
 Found by:  Infernal (score=15.91) Covels (score=10.83)
 Stem2 length = 9   Apical loop length = 23   Insertion in stem2 = 0, 0
 Free Energy = -16.27
 Type = 1

         ..(((((((..............(((((((((((((((...........................)))))))))))))))........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC------------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((..............([[{(((({(((((------.......................)))))}))))}]])----....))))))...
 target  CCUCGUCUCCCUGCCGUUCCUGAUGAAAAGCUCCCCU------CCUCCUCUCUGAGGGUUGGGGGCGGGGGUGCUUAGAA----AUUCGAGACGCCC
                                ****                ^^                               ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 312044 - 312126
 Found by:  Infernal (score=13.05) Covels (score=3.0)
 Stem2 length = 8   Apical loop length = 27   Insertion in stem2 = 0, 1
 Free Energy = -12.73
 Type = 1

         ..(((((((.......((((((((((((...........................)))))).))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugg------gccagg-cCuGAUGuu-u-uuucaugaccggc
         (({(((((((--....([[{((((((((...........................)))))).))}]])......-.-)))))))}))
 target  GGUCUGCAGG--UGAAUGACGGUUUGCUCUGGUCCCCCACCCAGGAGAAGACAGAGGCAGGUCCCGAAGCUAUG-U-CUUGUGGCCC
                         ****                                            ****                   

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 802315 - 802395
 Found by:  Infernal (score=12.88) Covels (score=5.75)
 Stem2 length = 7   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -22.06
 Type = 1

         ..(((((((........(((((((((((.......................)))))))))))............)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuu---u-uuucaugaccggc
         (((((((((........{[[(((((({((....................)-)}))))))]]}........-...)))))))))
 target  GGGAGGGCUGCAGUCCAUGAGGCUGGACGCGCCUGAGCGACUGAACACUU-GCCCAGCUGAUGUCUUCCA-CCAAGCCUUCCU
                          ****          ^^                         ****                     

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 333986 - 334064
 Found by:  Infernal (score=10.71) Covels (score=5.82)
 Stem2 length = 9   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -15.74
 Type = 1

         ..(((((((...........((((((((((.(((((...............))))).))))))))))...........)))))))..
 model   uucggucaugcg----UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuu--u-uuucaugaccggc
         ...((((((...........{[[{(((((([-((..........-----....))-]))))))}]]}.......-...))))))...
 target  GUCGGAGAAGCCGCUCAGCUUGAUGGUCUUG-CCGUCCAGGCAG-----GCCAGG-AAGGACUUGACGAGGCUC-UUGUUCUCCACC
                             ****            ^^                         ****