genewise output Score 341.31 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000007_1.0 1 MSLGRLCRLLKPALLCGALAAPGLAGTM MS RL RLLKPALLCGALAAPGLA TM MSFSRLYRLLKPALLCGALAAPGLASTM NIVO01030317.1:48946 aatacctcccacgcctggcggcgcgaaaGTGAGTG Intron 1 tgtggtagttaccttggctcccgtcgct<0-----[49030:49999] gctctgccgcgagaccgtgtgccgcccg SPP00000007_1.0 29 CASRDDWRCARSMHEFSAKDIDGHMVNLDKY CASRDDWRCARSMHEFSAKDIDG MVNLDKY CASRDDWRCARSMHEFSAKDIDGRMVNLDKY NIVO01030317.1:49997 CAGtgtcggtctgctacgttgagaggcagacgat -0>gccgaagggcgctaatccaataggttataaa cgccccgcttccgcacacgcccgcgtcgcgc SPP00000007_1.0 60 GFVCIVTNVASQXGKTEVNYTQL G VCIVTNVASQXGKT+VNYTQL R:R[cgg] GHVCIVTNVASQXGKTDVNYTQL NIVO01030317.1:50093 CGGTGGGTC Intron 2 CAGGgcgtagaaggtctgaaggatacc <2-----[50095:50171]-2> gatgttcatccaggacataacat ccgcccctgcgaacgtcacctgg SPP00000007_1.0 84 VDLHARYAECGLRILAFPCNQFGKQ E VDLHARYAECGLRILAFPCNQFG+Q E VDLHARYAECGLRILAFPCNQFGRQ E NIVO01030317.1:50242 ggccgctggtgtcacgtctactgacGTGCGTC Intron 3 CAGg tatacgacaggtgttctcgaatgga<0-----[50317:50454]-0>a ccgccaccgttagcgcctccgtggg g SPP00000007_1.0 110 PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG PGSN EIKEFAAGYNVKFD+FSKICVNGDDAHPLWKWMK+QPKG+G+LG PGSNAEIKEFAAGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGRGMLG NIVO01030317.1:50458 cgaaggaagtgggtagatgttaaatgaggggccctataagccagagacg cggacataatccgaatatattgatgtagaacactgagtatacagggttg agttggcagcttccccactgccgctatgcccctggaggacgcgggcgga SPP00000007_1.0 159 AIKWNFTK AIKWNFTK N:N[aac] AIKWNFTK NIVO01030317.1:50605 AAGTGAGTT Intron 4 TAGCgaatataa <2-----[50607:50717]-2> ctagatca ccagcccg SPP00000007_1.0 168 FLIDKNGCVVKRYGPMEEPLV FLIDKNGCVVKRYGPMEEPLV FLIDKNGCVVKRYGPMEEPLV NIVO01030317.1:50743 GTAAGGG Intron 5 CAGtcagaagtggactgcaggccg <0-----[50743:50882]-0>tttaaaggttagagctaactt ccttgcctggggttcgagcga // Making a R in phase 2 intron Making a N in phase 2 intron >NIVO01030317.1:subseq(555646,1182752).pep MSFSRLYRLLKPALLCGALAAPGLASTMCASRDDWRCARSMHEFSAKDIDGRMVNLDKYR GHVCIVTNVASQXGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNAEIKEFA AGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRY GPMEEPLV // >NIVO01030317.1:subseq(555646,1182752).[48946:50945].sp ATGAGCTTTAGCCGTCTGTACCGCCTGCTCAAGCCAGCGCTACTCTGCGGGGCTCTGGCT GCGCCCGGCCTGGCCAGCACCATGTGCGCGTCCCGCGACGACTGGCGCTGTGCTCGCTCC ATGCACGAATTCTCAGCCAAGGACATCGACGGGCGCATGGTTAACCTGGACAAGTACCGG GGCCACGTGTGCATCGTCACCAATGTGGCCTCGCAATGAGGCAAGACTGACGTAAACTAC ACTCAGCTGGTCGACCTGCACGCCCGATACGCCGAGTGTGGTTTACGGATCCTGGCCTTC CCTTGCAACCAGTTTGGGAGGCAGGAGCCAGGGAGTAATGCGGAGATCAAAGAGTTCGCT GCTGGCTACAACGTCAAATTCGATTTGTTCAGCAAGATCTGTGTAAATGGGGACGACGCC CACCCTCTGTGGAAATGGATGAAAGTCCAGCCCAAGGGGAGGGGCATGCTGGGAAACGCC ATCAAATGGAACTTCACCAAGTTCCTCATTGATAAGAACGGCTGTGTGGTGAAGCGGTAT GGTCCCATGGAAGAGCCCCTGGTA // NIVO01030317.1:subseq(555646,1182752) GeneWise match 48946 50945 341.31 + . NIVO01030317.1:subseq(555646,1182752)-genewise-prediction-1 NIVO01030317.1:subseq(555646,1182752) GeneWise cds 48946 49029 0.00 + 0 NIVO01030317.1:subseq(555646,1182752)-genewise-prediction-1 NIVO01030317.1:subseq(555646,1182752) GeneWise intron 49030 49999 0.00 + . NIVO01030317.1:subseq(555646,1182752)-genewise-prediction-1 NIVO01030317.1:subseq(555646,1182752) GeneWise cds 50000 50094 0.00 + 0 NIVO01030317.1:subseq(555646,1182752)-genewise-prediction-1 NIVO01030317.1:subseq(555646,1182752) GeneWise intron 50095 50171 0.00 + . NIVO01030317.1:subseq(555646,1182752)-genewise-prediction-1 NIVO01030317.1:subseq(555646,1182752) GeneWise cds 50172 50316 0.00 + 1 NIVO01030317.1:subseq(555646,1182752)-genewise-prediction-1 NIVO01030317.1:subseq(555646,1182752) GeneWise intron 50317 50454 0.00 + . NIVO01030317.1:subseq(555646,1182752)-genewise-prediction-1 NIVO01030317.1:subseq(555646,1182752) GeneWise cds 50455 50606 0.00 + 0 NIVO01030317.1:subseq(555646,1182752)-genewise-prediction-1 NIVO01030317.1:subseq(555646,1182752) GeneWise intron 50607 50717 0.00 + . NIVO01030317.1:subseq(555646,1182752)-genewise-prediction-1 NIVO01030317.1:subseq(555646,1182752) GeneWise cds 50718 50742 0.00 + 1 NIVO01030317.1:subseq(555646,1182752)-genewise-prediction-1 NIVO01030317.1:subseq(555646,1182752) GeneWise intron 50743 50882 0.00 + . NIVO01030317.1:subseq(555646,1182752)-genewise-prediction-1 NIVO01030317.1:subseq(555646,1182752) GeneWise cds 50883 50945 0.00 + 0 NIVO01030317.1:subseq(555646,1182752)-genewise-prediction-1 // genewise output Score 23.97 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000007_1.0 133 ICVNGDDAHPLWKWMK +C G HP W WM+ MCPEGPSRHPRWAWMR NIVO01030317.1-72197 atcggctaccatgtaa tgcagccgacggcgtg gctgtccgtcggcggg // >NIVO01030317.1:subseq(555646,1182752).pep MCPEGPSRHPRWAWMR // >NIVO01030317.1:subseq(555646,1182752).[72197:72148].sp ATGTGCCCTGAGGGTCCCTCCAGGCATCCCAGGTGGGCCTGGATGAGG // NIVO01030317.1:subseq(555646,1182752) GeneWise match 72197 72150 23.97 - . NIVO01030317.1:subseq(555646,1182752)-genewise-prediction-1 NIVO01030317.1:subseq(555646,1182752) GeneWise cds 72197 72150 0.00 - 0 NIVO01030317.1:subseq(555646,1182752)-genewise-prediction-1 //