------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 49389 - 49316
 Found by:  Infernal (score=15.02) Covels (score=25.77)
 Stem2 length = 9   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -14.84
 Type = 1

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...((([((---....([[((({(((({(((.....--........)))}))))})))]])......-...))])))...
 target  GGGGGCAUC---GCCAUGAAGGAGGGGCCCGAAGCC--CACGUGGGCGGACCUCCCUUGAGCCUGUC-UGAGGGGCCAGC
                         ****           ^^                        ****                   

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 31193 - 31119
 Found by:  Infernal (score=12.27) Covels (score=12.82)
 Stem2 length = 11   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -15.26
 Type = 1

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ....({(((.--....{[[((((((((((((.....--........))))))))))))]]}......-...)))})....
 target  UUCCUUCUGC--AGGGUGAGGGGUUUGGCCCACAUG--AUCUCAAAGGGCUGAGCUCUGAUGGUCAA-GACCAGUGUUUC
                         ****                                     ****                   

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 28046 - 28104
 Found by:  Infernal (score=10.12) Covels (score=1.32)
 Stem2 length = 7   Apical loop length = 8   Insertion in stem2 = 0, 0
 Free Energy = -12.2
 Type = 1

         ..(((((((.......((((((((((((.....................))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuuuuucaugaccggc
         ..(((({((---....([[((({(((((........-------------)))))})))]])..--..-.))}))))..
 target  UUUGGUAAA---UGAAUGAAUGAGUGAGCAAAUGGA-------------CUCACACAUGAGCU--CU-CUUAGCCACU
                         ****         ^^^                         ****