_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-26
 Query name: gi|965795156|ref|XP_011968829.2| PREDICTED: glutathione peroxidase 3 [Ovis aries musimon] >gi|965939247|ref|XP_014951639.1| PREDICTED: glutathione peroxidase 3 [Ovis aries]
 Query range: 1-226  (total 226)

 Target: /data/www-rg/seblastian_results/776915220/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  57169        57255
 -Exon 2  52508        52661
 -Exon 3  51181        51298
 -Exon 4  50641        50740
 -Exon 5  50000        50218

 Redox box: no

Query   MARLLRASCLLSLLLAGFIPPSQGQEKSK <---Intron---> MDCHAGVGGTIYEYGALTIDGEEYIPFKRYAGKYILFVNVASYUGLTGQYVE <-
        ||||||||||||||||||||||||||||| <   4507bp   >  ||||||||||||||||||||||||||||||||||||||||||||||||||| < 
Target  MARLLRASCLLSLLLAGFIPPSQGQEKSK                TDCHAGVGGTIYEYGALTIDGEEYIPFKRYAGKYILFVNVASYUGLTGQYVE   
        agccccgttcctcccggtaccacgcgata                agtcgggggaatgtggcaaggggtactactggatactgaggattgcagctgg   
        tcgttgccgttctttcgttccgagaaaca                cagacgtggctaaagctctagaaatctagacgaattttatcgaggtcgaat    
        gcgccgacctccgcgccctcgcgaggggg                gcctttgcccctgcgcccctgggctctggttcaccccccgcccacggcgtt    
                                                                                                *           

Query   --Intron---> LNALQEELEPFGLVILGFPCNQFGKQEPGENSEILATLK <---Intron---> YVRPGGGFTPNFQLFEKGDVNGEKEQKFYTFL
          1209bp   > ||||||||||||||||||||||||||||||||||||||| <   440bp    > ||||||||||||||||||||||||||||||||
Target               LNALQEELEPFGLVILGFPCNQFGKQEPGENSEILATLK                YVRPGGGFTPNFQLFEKGDVNGEKEQKFYTFL
                     cagccggcgctgcgacgtctactgacgcggatgacgaca                tgccgggtacatcctgagggaggagcattatc
                    atactaaatactgttttgtcgaatgaaacgaacattccta                atgcgggtccatattaagatagaaaaatactt
                    agtaggagtaactgctgcccccataaaaaagcggcaccc                gttagtgccccccggtgactgcggagggccacg
                                                                                                            

Query   K <---Intron---> NSCPPTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHRTTVNSVKMDILTYMRRRAVLEAKGK
        | <   422bp    > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  K                NSCPPTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHRTTVNSVKMDILTYMRRRAVLEAKGK
        a                attccatgccgtcgccttgcaagcgactatgatcggcggacaacttccaagatgaagacatacccggcggaga
        a                acgccccattgccggttgactataatggataatttgcagtcttggaagcctactatattcatgggcttacaga
        g                cctttcggcacaccctcgacggctccggctggcgggacccccgcgccccgcctcggtcgccggggacggcggg
                                                                                                  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 610 ; UGA-SECIS: 1069

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 49389 - 49316
 Found by:  Infernal (score=15.02) Covels (score=25.77)
 Stem2 length = 9   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -14.84
 Type = 1

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...((([((---....([[((({(((({(((.....--........)))}))))})))]])......-...))])))...
 target  GGGGGCAUC---GCCAUGAAGGAGGGGCCCGAAGCC--CACGUGGGCGGACCUCCCUUGAGCCUGUC-UGAGGGGCCAGC
                         ****           ^^                        ****