------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 19238 - 19174
 Found by:  Infernal (score=32.21) Covels (score=24.26)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -21.9
 Type = 1

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((((((---....([[{((((({((((......-..-----...))))})))))}]])----....)))))))).
 target  UGUCUUCAC---AGAAUGAUGGCACCGUCCUAAAUC-UG-----UACGGGCAGUGUCUGAG----AAGAGUGAAGGCC
                         ****           ^^^                       ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 481623 - 481691
 Found by:  Infernal (score=16.22) Covels (score=7.23)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -32.0
 Type = 1

         ..(((((((.......(((((((((((((((..................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((({[((--(...{[[[((((((((((------(............)))))))))))]]]}----..)))]}))))..
 target  CUGGGCAAAG--GCAAUGAAGGCAGGGGGG------GGGGAAGAUGAGGCUCCCCCUGCUGGAC----ACCCUGAGCCUCU
                         ****                                        ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 1134534 - 1134610
 Found by:  Infernal (score=14.93) Covels (score=6.23)
 Stem2 length = 9   Apical loop length = 23   Insertion in stem2 = 0, 0
 Free Energy = -12.8
 Type = 1

         ..(((((((........(((((((((((((((...................)))))))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(([(((((........([[{(((((((((.......................)))))))))}]])----.--.)))))])).
 target  AUCACUCAGCAACUAAGUGAUGACCUUAUUAUGACCUUAGAGGUGGGUAAAUAAGUAAGGUCUGAA----C--CCUGAGGGAA
                          ****                                         ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 690089 - 690167
 Found by:  Infernal (score=13.37) Covels (score=6.77)
 Stem2 length = 10   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -6.79
 Type = 1

         ..(((((((.......(((((((((((((((...............)))))))))))))))............)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         ..({(((((.......{[[[(((({((((((.....--........))))))}))))]]]}........-...)))))})..
 target  GGCAUGGGGCCCAGGUUGAAGCUAUUAGGUAAAAUG--ACAUUAGGUGUUUAUUGGUGGAUAAAUGACU-UUCCCUCAAGGU
                         ****           ^^^                       ****                     

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 351348 - 351284
 Found by:  Infernal (score=13.12)
 Stem2 length = 8   Apical loop length = 8   Insertion in stem2 = 0, 0
 Free Energy = -11.66
 Type = 1

         ..(((((((..........((((((((((((.....................))))))))))))........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((..........([[{(([(((((........-------------)))))]))}]])..--..-.)))))))..
 target  CUGGUGCUUCUUCCCAGCAUGAUGGGCUUUCAUAUUACA-------------GAAGGACCUGAGGU--UU-UAAGUGCCUA
                            ****                                     ****                 

------- SECIS element -- id:6 -- grade:C ----
 Chromosome = your_sequence Strand = + Positions = 362100 - 362174
 Found by:  Infernal (score=12.21) Covels (score=1.44)
 Stem2 length = 7   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -10.66
 Type = 1

         ..(((((((.......((((((((((.(((((...............))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         ...((((((.......([[{{((({{{((((......---........))))}}})))}}]])..--....))))))...
 target  AAAUGAAGGCCAAGAAUGAUAACUUAAUAGCUACAUG---GCAGGCCUGCUAACCAGUCUGAGAU--CUUCCUUUCACAC
                         ****                                       ****                 

------- SECIS element -- id:7 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 960006 - 960095
 Found by:  Infernal (score=11.58) Covels (score=9.19)
 Stem2 length = 9   Apical loop length = 23   Insertion in stem2 = 0, 1
 Free Energy = -8.05
 Type = 1

         ..(((((((............(((((((((((((((.....................))))))).)))))))).........)))))))..
 model   uucggucaugcg-----UuaAUGAcGgccuggcccuAAAcC------cuuuuuggggcgggcca-ggcCuGAUGuuu-uuucaugaccggc
         ...((([((............([[((({(((((((.......................)))))).)})))]]).....-...))])))...
 target  AGUGGAAUUGCUAAGGUCAGAUGAAGGGUAGAGAAGAACACAGCACACCUCACAUGCAUUCUCUCAGCCUGAGGAGUC-UGGAGGUCCCAU
                              ****           ^^                               ****                  

------- SECIS element -- id:8 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 754495 - 754422
 Found by:  Infernal (score=11.31) Covels (score=4.33)
 Stem2 length = 7   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -8.69
 Type = 1

         ..(((((((........((((((((((((.....................))))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuu-u-uuucaugaccggc
         ....(((((........([[{({((((((...............------))))))})}]])......-...)))))....
 target  GCUGGAGAUAUGGUGGAUGAUGACAUUGUAUGUCUCUGUUCCUC------ACAGUGCCUGAAGCUGCU-GGGAUCUCAUUU
                          ****                                     ****                   

------- SECIS element -- id:9 -- grade:C ----
 Chromosome = your_sequence Strand = + Positions = 929336 - 929410
 Found by:  Infernal (score=11.28) Covels (score=4.66)
 Stem2 length = 7   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -8.64
 Type = 1

         ..(((((((.......((((((((((.(((((.................))))).))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC--cuuuuuggggcgggc-caggcCuGAUGuu-u-uuucaugaccggc
         .((((((((.--....{[[(({((({{{(((------(...........))))}}})))}))]]}......-...)))))))).
 target  UUUAGCAUCG--UCAAUGAAGCAAAAGUAGA------UGUUUUUCUGGAAUCUUGCUUUUUUGAUGAUCCA-AUGGAUGUUGGU
                         ****                                         ****                   

------- SECIS element -- id:10 -- grade:C ----
 Chromosome = your_sequence Strand = - Positions = 427696 - 427619
 Found by:  Infernal (score=10.1) Covels (score=3.65)
 Stem2 length = 8   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -8.95
 Type = 1

         ..(((((((.......(((((((((((((((..................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..(((({((.--....{[[[((({{(((((....................)))))}})))]]]}.....-.-.))}))))..
 target  UUCCUGCUGA--UUCAUGAAGUGAAGUCGCUCAGUCGUAUCCGACUCUUUGCGACCCCGUGGACUGUAG-C-CUACCAGGCU
                         ****                                        ****