------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = + Positions = 50876 - 50946 Found by: Infernal (score=32.66) Covels (score=29.15) Stem2 length = 12 Apical loop length = 8 Insertion in stem2 = 1, 0 Free Energy = -23.0 Type = 1 ..(((((((.......((((((((((.(((((...............))))))))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc (((((((((.--....{[[((((((((.(((((.......-----.)))))))))))))]]}.....-.-.))))))))) target GGGGAUUUUG--CCCAUGAAGGUGUUCCCUCUAAACCUAC-----AUGGAGGAAUGCCUGAUGUCCA-G-GAAAAUCCUC **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = your_sequence Strand = + Positions = 42608 - 42686 Found by: Infernal (score=10.1) Covels (score=2.64) Stem2 length = 9 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -13.25 Type = 1 ..(((((((..............(((((((((((((((...................)))))))))))))))........))))))).. model uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ((((((([((.............([[(((((({((((------...............))))}))))))]])----...))]))))))) target GAAAGGAAUAGCCCCUACCUAUGUGAUGCUUUCAUUG------AGACAUUUUUUUGAGCAGUAAAAGCAGAG----CCAUAGUCCUUUU **** ****