_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-76
 Query name: gi|965813140|ref|XP_011977501.2| PREDICTED: glutathione peroxidase 1 [Ovis aries musimon] >gi|965990230|ref|XP_004018511.2| PREDICTED: glutathione peroxidase 1 [Ovis aries]
 Query range: 1-205  (total 205)

 Target: /data/www-rg/seblastian_results/106116581/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  49952        50212
 -Exon 2  50474        50827

 Redox box: no

Query   MCAAQRSAAALAAAAPRTVYAFSARPLAGGEPFHLASLRGKVLLIENVASLUGTTVRDYTQMNDLQRRLGPRGLVVLGFPCNQFGHQ <---Intron--
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   261bp   
Target  MCAAQRSAAALAAAAPRTVYAFSARPLAGGEPFHLASLRGKVLLIENVASLUGTTVRDYTQMNDLQRRLGPRGLVVLGFPCNQFGHQ             
        atggcctgggcggggccagtgttgcccggggctccgtccgagccagaggtctgaagcgtacaagcccccgccgcggcgtctactgcc             
        tgccagcccctcccccgctactccgctcggactatcctggattttaatcctggcctgaacataataggtgcggttttgtcgaatgaa             
        gcctgcggccggggcgcggccccgttgccggcccgccggcgggctgcaggcacagggcccggtcgggccacgcgcacccgccgtgtg             
                                                           *                                                

Query   -> ENAKNEEILNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLRETLPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSR
         > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target     ENAKNEEILNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLRETLPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSR
           gagaaggacatcatgccgggtgcatactgatggaggagccctgtccgaccacagggagcaagcataattcgtcaggttatgatcggcgggcgcatac
           aacaaaattagtaatgcgggtacattttaagatagaacacttcttgactcccgaacccttcacattcgcctggaatcgataatttgcagtctggagg
           accgcggcgtcggccagctgcgctcgccagcggtcgggtgcccctggtgcgatcccttcgcctgccggcggccccccgccggcggcactgcgcgccc
                                                                                                            

Query   RFLTIDIEPDIETLLSQGASA
        |||||||||||||||||||||
Target  RFLTIDIEPDIETLLSQGASA
        ctcaagagcgagacctcggtg
        gttctatacatacttcagccc
        ctgccccgtctacggcggctc
                             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 48 ; UGA-SECIS: 507

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 50876 - 50946
 Found by:  Infernal (score=32.66) Covels (score=29.15)
 Stem2 length = 12   Apical loop length = 8   Insertion in stem2 = 1, 0
 Free Energy = -23.0
 Type = 1

         ..(((((((.......((((((((((.(((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         (((((((((.--....{[[((((((((.(((((.......-----.)))))))))))))]]}.....-.-.)))))))))
 target  GGGGAUUUUG--CCCAUGAAGGUGUUCCCUCUAAACCUAC-----AUGGAGGAAUGCCUGAUGUCCA-G-GAAAAUCCUC
                         ****             ^^                       ****