Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q ../GPx1-human.fa -t GPx1-NIVO01040474.1.subseq]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete
        Target: NIVO01040474.1:subseq(1782700,100824) Ammotragus lervia isolate NAZ scaffold5206_len2152014_cov73, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 914
   Query range: 6 -> 201
  Target range: 49978 -> 50824

     7 : AlaAlaAlaAlaAlaAlaAlaGlnSerValTyrAlaPheSerAlaArgProLeuAlaGly :    26
         |||  !|||||||||||| !!!::!!!|||||||||||||||||||||||||||||||||
         AlaLeuAlaAlaAlaAlaProArgThrValTyrAlaPheSerAlaArgProLeuAlaGly
 49979 : GCCCTGGCGGCGGCGGCCCCGCGCACGGTGTACGCCTTCTCCGCGCGTCCTCTGGCCGGC : 50036

    27 : GlyGluProValSerLeuGlySerLeuArgGlyLysValLeuLeuIleGluAsnValAla :    46
         ||||||||| !!  !|||!.!|||||||||||||||||||||||||||||||||||||||
         GlyGluProPheHisLeuAlaSerLeuArgGlyLysValLeuLeuIleGluAsnValAla
 50037 : GGGGAGCCCTTCCACCTGGCCTCCCTGCGGGGCAAGGTGCTGCTCATTGAGAACGTAGCG : 50096

    47 : SerLeuUnkGlyThrThrValArgAspTyrThrGlnMetAsnGluLeuGlnArgArgLeu :    66
         ||||||   |||||||||||||||||||||||||||||||||!!:|||||||||||||||
         SerLeu***GlyThrThrValArgAspTyrThrGlnMetAsnAspLeuGlnArgArgLeu
 50097 : TCGCTCTGAGGCACAACGGTGCGGGACTACACCCAGATGAATGACCTGCAGCGGCGCCTC : 50156

    67 : GlyProArgGlyLeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln  >>>> :    85
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
         GlyProArgGlyLeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln++    
 50157 : GGACCCCGGGGCCTGGTCGTACTCGGCTTCCCGTGCAACCAGTTTGGGCATCAGgt.... : 50215

    86 :  Target Intron 1 >>>>  GluAsnAlaLysAsnGluGluIleLeuAsnSerLeuL :    97
               261 bp           ||||||||||||||||||||||||||||||!!!||||
                              ++GluAsnAlaLysAsnGluGluIleLeuAsnCysLeuL
 50216 : .....................agGAAAACGCCAAGAACGAGGAGATCCTGAATTGCCTGA : 50510

    98 : ysTyrValArgProGlyGlyGlyPheGluProAsnPheMetLeuPheGluLysCysGluV :   117
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ysTyrValArgProGlyGlyGlyPheGluProAsnPheMetLeuPheGluLysCysGluV
 50511 : AGTACGTCCGACCGGGCGGTGGGTTCGAGCCCAATTTCATGCTCTTCGAAAAGTGCGAGG : 50570

   118 : alAsnGlyAlaGlyAlaHisProLeuPheAlaPheLeuArgGluAlaLeuProAlaProS :   137
         ||||||||! !  !||||||||||||||||||||||||||||||.!!||||||.!!||||
         alAsnGlyGluLysAlaHisProLeuPheAlaPheLeuArgGluThrLeuProThrProS
 50571 : TGAATGGCGAGAAGGCGCATCCGCTCTTCGCCTTCCTTCGGGAGACTCTGCCCACGCCAA : 50630

   138 : erAspAspAlaThrAlaLeuMetThrAspProLysLeuIleThrTrpSerProValCysA :   157
         |||||||||||||||||||||||||||||||||||!!!||||||||||||||||||||||
         erAspAspAlaThrAlaLeuMetThrAspProLysPheIleThrTrpSerProValCysA
 50631 : GTGACGACGCCACTGCTCTCATGACCGACCCTAAGTTCATCACGTGGTCCCCGGTGTGCC : 50690

   158 : rgAsnAspValAlaTrpAsnPheGluLysPheLeuValGlyProAspGlyValProLeuA :   177
         |||||||||||:!!||||||||||||||||||||||||||||||||||||||||||:!!|
         rgAsnAspValSerTrpAsnPheGluLysPheLeuValGlyProAspGlyValProValA
 50691 : GCAACGACGTCTCCTGGAACTTCGAGAAGTTCCTGGTGGGCCCAGACGGTGTGCCCGTGC : 50750

   178 : rgArgTyrSerArgArgPheGlnThrIleAspIleGluProAspIleGluAlaLeuLeuS :   197
         ||||||||||||||||||||! !|||||||||||||||||||||||||||.!!|||||||
         rgArgTyrSerArgArgPheLeuThrIleAspIleGluProAspIleGluThrLeuLeuS
 50751 : GCAGGTACAGCCGCCGCTTTCTGACCATCGACATCGAGCCTGACATTGAAACCCTGCTGT : 50810

   198 : erGlnGlyProSer :   201
         |||||||| !!|||
         erGlnGlyAlaSer
 50811 : CCCAGGGGGCCTCT : 50824

vulgar: SPP00000004_1.0 6 201 . NIVO01040474.1:subseq(1782700,100824) 49978 50824 + 914 M 78 234 5 0 2 I 0 257 3 0 2 M 117 351
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
NIVO01040474.1:subseq(1782700,100824)	exonerate:protein2genome:local	gene	49979	50824	914	+	.	gene_id 1 ; sequence SPP00000004_1.0 ; gene_orientation +
NIVO01040474.1:subseq(1782700,100824)	exonerate:protein2genome:local	cds	49979	50212	.	+	.	
NIVO01040474.1:subseq(1782700,100824)	exonerate:protein2genome:local	exon	49979	50212	.	+	.	insertions 0 ; deletions 0
NIVO01040474.1:subseq(1782700,100824)	exonerate:protein2genome:local	splice5	50213	50214	.	+	.	intron_id 1 ; splice_site "GT"
NIVO01040474.1:subseq(1782700,100824)	exonerate:protein2genome:local	intron	50213	50473	.	+	.	intron_id 1
NIVO01040474.1:subseq(1782700,100824)	exonerate:protein2genome:local	splice3	50472	50473	.	+	.	intron_id 0 ; splice_site "AG"
NIVO01040474.1:subseq(1782700,100824)	exonerate:protein2genome:local	cds	50474	50824	.	+	.	
NIVO01040474.1:subseq(1782700,100824)	exonerate:protein2genome:local	exon	50474	50824	.	+	.	insertions 0 ; deletions 0
NIVO01040474.1:subseq(1782700,100824)	exonerate:protein2genome:local	similarity	49979	50824	914	+	.	alignment_id 1 ; Query SPP00000004_1.0 ; Align 49979 7 234 ; Align 50474 85 351
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis