------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = + Positions = 51406 - 51486 Found by: Infernal (score=21.4) Covels (score=23.4) Stem2 length = 9 Apical loop length = 17 Insertion in stem2 = 0, 0 Free Energy = -14.8 Type = 1 ..(((((((..........(((((((((((((((...............))))))))))))))).........))))))).. model uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc (({((((((..........{[[{(((((({(((.................)))}))))))}]]}.....-...))))))})) target UUACGAGCCCCACUGCUGAUGACGAGCUGUCUCUAACUGGCCUCGACCACGAGCUGGUUCUGAUUUGCA-GGAGGCUCGCAG **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = your_sequence Strand = + Positions = 37568 - 37634 Found by: Infernal (score=11.12) Covels (score=6.93) Stem2 length = 9 Apical loop length = 13 Insertion in stem2 = 0, 0 Free Energy = -18.12 Type = 1 ..(((((((.......((((((((((.(((((................))))).))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC-cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc .([((((((---((..{[[{((((({{((((..........-----...))))}})))))}]]}----)--)))))))]). target CUGGGCUUU---GUUGUGAAGAGCAAAGACUCAAAGCUGGA-----GACAGUUCAUGCUCAGAU----G--CAGAGUCAGA **** ^^^ ****