Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q ../DI3-human.fa -t DI3-NIVO01034600.1.subseq]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) # Homo sapiens # Complete
        Target: NIVO01034600.1:subseq(4197712,100797) Ammotragus lervia isolate NAZ scaffold37_len5366835_cov71, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1413
   Query range: 0 -> 278
  Target range: 49963 -> 50797

     1 : MetLeuArgSerLeuLeuLeuHisSerLeuArgLeuCysAlaGlnThrAlaSerCysLeu :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         MetLeuArgSerLeuLeuLeuHisSerLeuArgLeuCysAlaGlnThrAlaSerCysLeu
 49964 : ATGCTGCGCTCCCTGCTGCTTCACTCCCTGAGGCTCTGCGCCCAGACGGCCTCGTGCCTC : 50021

    21 : ValLeuPheProArgPheLeuGlyThrAlaPheMetLeuTrpLeuLeuAspPheLeuCys :    40
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ValLeuPheProArgPheLeuGlyThrAlaPheMetLeuTrpLeuLeuAspPheLeuCys
 50022 : GTGCTCTTCCCGCGCTTCCTGGGCACGGCCTTCATGCTCTGGCTGCTAGACTTCCTGTGC : 50081

    41 : IleArgLysHisPheLeuGlyArgArgArgArgGlyGlnProGluProGluValGluLeu :    60
         ||||||||||||!!.||||||||||||||||||||||||||||||  !||||||||||||
         IleArgLysHisLeuLeuGlyArgArgArgArgGlyGlnProGluIleGluValGluLeu
 50082 : ATCCGCAAGCACTTACTGGGCCGTCGACGCCGGGGTCAGCCGGAAATCGAAGTGGAGCTC : 50141

    61 : AsnSerGluGlyGluGluValProProAspAspProProIleCysValSerAspAspAsn :    80
         ||||||!!:||||||||||||||||||||||||||||||:!!||||||||||||||||||
         AsnSerAspGlyGluGluValProProAspAspProProValCysValSerAspAspAsn
 50142 : AACAGCGACGGCGAAGAGGTGCCCCCCGACGACCCGCCTGTCTGCGTGTCCGATGACAAC : 50201

    81 : ArgLeuCysThrLeuAlaSerLeuLysAlaValTrpHisGlyGlnLysLeuAspPhePhe :   100
         ||||||||||||||||||||||||!:!|||||||||||||||||||||||||||||||||
         ArgLeuCysThrLeuAlaSerLeuArgAlaValTrpHisGlyGlnLysLeuAspPhePhe
 50202 : CGCCTGTGCACCTTGGCGTCGCTGAGGGCCGTCTGGCACGGCCAGAAGTTGGATTTCTTC : 50261

   101 : LysGlnAlaHisGluGlyGlyProAlaProAsnSerGluValValLeuProAspGlyPhe :   120
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LysGlnAlaHisGluGlyGlyProAlaProAsnSerGluValValLeuProAspGlyPhe
 50262 : AAGCAGGCGCATGAAGGCGGGCCGGCGCCTAACTCTGAGGTGGTCCTGCCCGACGGCTTC : 50321

   121 : GlnSerGlnHisIleLeuAspTyrAlaGlnGlyAsnArgProLeuValLeuAsnPheGly :   140
         |||!:!|||||||||||||||||||||!:!||||||||||||||||||||||||||||||
         GlnAsnGlnHisIleLeuAspTyrAlaArgGlyAsnArgProLeuValLeuAsnPheGly
 50322 : CAGAACCAGCACATCCTCGACTACGCCCGAGGAAACCGCCCGCTGGTGCTCAACTTCGGT : 50381

   141 : SerCysThrUnkProProPheMetAlaArgMetSerAlaPheGlnArgLeuValThrLys :   160
         |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
         SerCysThr***ProProPheMetAlaArgMetSerAlaPheGlnArgLeuValThrLys
 50382 : AGCTGCACCTGACCACCGTTCATGGCGCGCATGAGCGCCTTCCAGCGCCTGGTCACCAAG : 50441

   161 : TyrGlnArgAspValAspPheLeuIleIleTyrIleGluGluAlaHisProSerAspGly :   180
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         TyrGlnArgAspValAspPheLeuIleIleTyrIleGluGluAlaHisProSerAspGly
 50442 : TATCAGCGCGACGTCGACTTCCTCATCATCTACATCGAGGAAGCGCACCCTTCCGACGGC : 50501

   181 : TrpValThrThrAspSerProTyrIleIleProGlnHisArgSerLeuGluAspArgVal :   200
         ||||||||||||||||||||||||! !|||||||||||||||||||||||||||||||||
         TrpValThrThrAspSerProTyrSerIleProGlnHisArgSerLeuGluAspArgVal
 50502 : TGGGTCACCACAGACTCTCCCTACAGCATCCCGCAGCACCGAAGCCTGGAGGACCGGGTC : 50561

   201 : SerAlaAlaArgValLeuGlnGlnGlyAlaProGlyCysAlaLeuValLeuAspThrMet :   220
         |||||||||||||||||||||||||||||||||! !||||||||||||||||||||||||
         SerAlaAlaArgValLeuGlnGlnGlyAlaProGluCysAlaLeuValLeuAspThrMet
 50562 : AGCGCCGCGCGCGTACTGCAGCAAGGGGCTCCGGAATGCGCTCTCGTGCTCGACACAATG : 50621

   221 : AlaAsnSerSerSerSerAlaTyrGlyAlaTyrPheGluArgLeuTyrValIleGlnSer :   240
         .!!|||||||||||||||||||||||||||||||||||||||||||||:!!|||||||||
         ThrAsnSerSerSerSerAlaTyrGlyAlaTyrPheGluArgLeuTyrIleIleGlnSer
 50622 : ACCAACTCCAGCAGCTCGGCCTACGGCGCCTACTTCGAGCGCCTCTACATCATCCAGAGT : 50681

   241 : GlyThrIleMetTyrGlnGlyGlyArgGlyProAspGlyTyrGlnValSerGluLeuArg :   260
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyThrIleMetTyrGlnGlyGlyArgGlyProAspGlyTyrGlnValSerGluLeuArg
 50682 : GGCACCATTATGTACCAGGGCGGCCGCGGCCCCGACGGCTACCAGGTCTCCGAGCTGCGC : 50741

   261 : ThrTrpLeuGluArgTyrAspGluGlnLeuHisGlyAlaArgProArgArgVal :   278
         |||||||||||||||||||||||||||||||||||| !!!:!||||||||||||
         ThrTrpLeuGluArgTyrAspGluGlnLeuHisGlyProGlnProArgArgVal
 50742 : ACCTGGCTGGAGCGCTATGATGAGCAGCTGCACGGCCCGCAGCCCCGTCGAGTG : 50797

vulgar: SPP00000003_1.0 0 278 . NIVO01034600.1:subseq(4197712,100797) 49963 50797 + 1413 M 278 834
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
NIVO01034600.1:subseq(4197712,100797)	exonerate:protein2genome:local	gene	49964	50797	1413	+	.	gene_id 1 ; sequence SPP00000003_1.0 ; gene_orientation .
NIVO01034600.1:subseq(4197712,100797)	exonerate:protein2genome:local	cds	49964	50797	.	+	.	
NIVO01034600.1:subseq(4197712,100797)	exonerate:protein2genome:local	exon	49964	50797	.	+	.	insertions 0 ; deletions 0
NIVO01034600.1:subseq(4197712,100797)	exonerate:protein2genome:local	similarity	49964	50797	1413	+	.	alignment_id 1 ; Query SPP00000003_1.0 ; Align 49964 1 834
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis