Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q ../DI2-human.fa -t DI2-NIVO01066248.1.subseq]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) # Homo sapiens # Complete
        Target: NIVO01066248.1:subseq(6673153,109011) Ammotragus lervia isolate NAZ scaffold348_len6808047_cov72, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1271
   Query range: 0 -> 265
  Target range: 59011 -> 49999

     1 : MetGlyIleLeuSerValAspLeuLeuIleThrLeuGlnIleLeuProValPhePheSer :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         MetGlyIleLeuSerValAspLeuLeuIleThrLeuGlnIleLeuProValPhePheSer
 59011 : ATGGGCATCCTCAGCGTAGACTTGCTGATCACACTGCAGATTCTGCCAGTTTTTTTCTCC : 58954

    21 : AsnCysLeuPheLeuAlaLeuTyrAspSerValIleLeuLeuLysHisValValLeuLeu :    40
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnCysLeuPheLeuAlaLeuTyrAspSerValIleLeuLeuLysHisValValLeuLeu
 58953 : AACTGCCTCTTCCTGGCGCTCTATGACTCGGTCATTCTCCTCAAGCACGTGGTGCTGCTG : 58894

    41 : LeuSerArgSerLysSerThrArgGlyGluTrpArgArgMetLeuThrSerGluGlyLeu :    60
         |||||||||||||||||||||||||||:!!|||||||||||||||||||||||||||:!!
         LeuSerArgSerLysSerThrArgGlyGlnTrpArgArgMetLeuThrSerGluGlyMet
 58893 : CTGAGCCGCTCCAAGTCCACTCGCGGGCAGTGGAGGCGCATGCTGACCTCAGAAGGAATG : 58834

    61 : ArgCysValTrpLysSerPheLeuLeuAspAlaTyrLysGln  >>>> Target Intr :    75
         ||||||:!!|||||||||||||||||||||||||||||||||           8217 bp
         ArgCysIleTrpLysSerPheLeuLeuAspAlaTyrLysGln++                
 58833 : CGCTGCATCTGGAAAAGCTTCCTCCTGGACGCCTACAAACAGgt................ : 58787

    76 : on 1 >>>>  ValLysLeuGlyGluAspAlaProAsnSerSerValValHisValSerS :    91
                    |||||||||||||||||||||||||||||| !!||||||! !|||||||
                  ++ValLysLeuGlyGluAspAlaProAsnSerArgValValProValSerS
 58786 : .........agGTGAAACTGGGTGAAGATGCCCCCAATTCCCGCGTGGTGCCTGTCTCCA : 50524

    92 : erThrGluGlyGlyAspAsnSerGlyAsnGlyThrGlnGluLysIleAlaGluGlyAlaT :   111
         || !!||||||||||||!.!||||||||||||.!!|||||||||! !|||!!:||| !! 
         erProGluGlyGlyAspThrSerGlyAsnGlyAlaGlnGluLysThrAlaAspGlyProG
 50523 : GTCCGGAAGGAGGTGACACCAGTGGAAATGGTGCCCAGGAGAAAACAGCGGATGGACCTG : 50464

   112 : hrCysHisLeuLeuAspPheAlaSerProGluArgProLeuValValAsnPheGlySerA :   131
          !||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         luCysHisLeuLeuAspPheAlaSerProGluArgProLeuValValAsnPheGlySerA
 50463 : AATGCCACCTTCTGGACTTTGCCAGCCCTGAGCGCCCGCTGGTGGTCAACTTCGGCTCGG : 50404

   132 : laThrUnkProProPheThrSerGlnLeuProAlaPheArgLysLeuValGluGluPheS :   151
         |||||   ||||||||||||!:!|||||||||||||||!!!|||||||||||||||||||
         laThr***ProProPheThrAsnGlnLeuProAlaPheSerLysLeuValGluGluPheS
 50403 : CCACTTGACCTCCTTTCACTAACCAGCTGCCAGCCTTCAGCAAACTGGTGGAAGAGTTCT : 50344

   152 : erSerValAlaAspPheLeuLeuValTyrIleAspGluAlaHisProSerAspGlyTrpA :   171
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         erSerValAlaAspPheLeuLeuValTyrIleAspGluAlaHisProSerAspGlyTrpA
 50343 : CATCCGTGGCTGACTTCCTGTTGGTCTACATTGATGAGGCTCATCCTTCAGATGGTTGGG : 50284

   172 : laIleProGlyAspSerSerLeuSerPheGluValLysLysHisGlnAsnGlnGluAspA :   191
         ||:!:||||||||||||||||||   ||||||||||||||||||!:!|||||||||||||
         laValProGlyAspSerSerLeuPhePheGluValLysLysHisArgAsnGlnGluAspA
 50283 : CGGTGCCTGGggattcttctttgtttttcgaGGTGAAGAAGCACCGGAACCAGGAAGACC : 50224

   192 : rgCysAlaAlaAlaGlnGlnLeuLeuGluArgPheSerLeuProProGlnCysArgValV :   211
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         rgCysAlaAlaAlaGlnGlnLeuLeuGluArgPheSerLeuProProGlnCysArgValV
 50223 : GATGCGCAGCAGCCCAGCAGCTCCTGGAGCGTTTCTCCTTGCCGCCCCAGTGCCGAGTTG : 50164

   212 : alAlaAspArgMetAspAsnAsnAlaAsnIleAlaTyrGlyValAlaPheGluArgValC :   231
         |||||||||||||||||||||||||||||:!!||||||||||||||||||||||||||||
         alAlaAspArgMetAspAsnAsnAlaAsnValAlaTyrGlyValAlaPheGluArgValC
 50163 : TGGCTGACCGCATGGACAATAATGCCAACGTCGCTTATGGGGTAGCCTTTGAACGCGTGT : 50104

   232 : ysIleValGlnArgGlnLysIleAlaTyrLeuGlyGlyLysGlyProPheSerTyrAsnL :   251
         ||||||||||||||||||||||||||||||||||||||||||||||||||! !|||||||
         ysIleValGlnArgGlnLysIleAlaTyrLeuGlyGlyLysGlyProPhePheTyrAsnL
 50103 : GCATTGTGCAGAGACAGAAAATTGCTTATCTGGGAGGAAAGGGTCCCTTCTTTTACAACC : 50044

   252 : euGlnGluValArgHisTrpLeuGluLysAsnPheSerLysArg :   265
         ||||||||||||||!.!|||||||||||||||||||||||||||
         euGlnGluValArgArgTrpLeuGluLysAsnPheSerLysArg
 50043 : TGCAAGAAGTCCGGCGTTGGCTGGAGAAGAATTTCAGCAAGAGA : 50000

vulgar: SPP00000002_1.0 0 265 . NIVO01066248.1:subseq(6673153,109011) 59011 49999 - 1271 M 74 222 5 0 2 I 0 8213 3 0 2 M 191 573
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
NIVO01066248.1:subseq(6673153,109011)	exonerate:protein2genome:local	gene	50000	59011	1271	-	.	gene_id 1 ; sequence SPP00000002_1.0 ; gene_orientation +
NIVO01066248.1:subseq(6673153,109011)	exonerate:protein2genome:local	cds	58790	59011	.	-	.	
NIVO01066248.1:subseq(6673153,109011)	exonerate:protein2genome:local	exon	58790	59011	.	-	.	insertions 0 ; deletions 0
NIVO01066248.1:subseq(6673153,109011)	exonerate:protein2genome:local	splice5	58788	58789	.	-	.	intron_id 1 ; splice_site "GT"
NIVO01066248.1:subseq(6673153,109011)	exonerate:protein2genome:local	intron	50573	58789	.	-	.	intron_id 1
NIVO01066248.1:subseq(6673153,109011)	exonerate:protein2genome:local	splice3	50573	50574	.	-	.	intron_id 0 ; splice_site "AG"
NIVO01066248.1:subseq(6673153,109011)	exonerate:protein2genome:local	cds	50000	50572	.	-	.	
NIVO01066248.1:subseq(6673153,109011)	exonerate:protein2genome:local	exon	50000	50572	.	-	.	insertions 0 ; deletions 0
NIVO01066248.1:subseq(6673153,109011)	exonerate:protein2genome:local	similarity	50000	59011	1271	-	.	alignment_id 1 ; Query SPP00000002_1.0 ; Align 59012 1 222 ; Align 50573 75 573
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis