genewise output
Score 20.13 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000001_1.0  143 FSSIADFLVIYIEEAHASDGW                             
                     F S+++F  +Y +  H   GW                             
                     FPSLSEFSTVYCDPYHQRLGW                             
NIVO01071179.1:89884 tctctgttagttgctccacgt                             
                     tcctcatcctagacaaagtgg                             
                     cattaattattttactagttg                             


//
>NIVO01071179.1:subseq(592045,106696).pep
FPSLSEFSTVYCDPYHQRLGW
//
>NIVO01071179.1:subseq(592045,106696).[89884:89946].sp
TTCCCATCTCTTTCAGAATTTTCTACAGTTTATTGTGATCCATACCATCAAAGGCTTGGT
TGG
//
NIVO01071179.1:subseq(592045,106696)	GeneWise	match	89884	89946	20.13	+	.	NIVO01071179.1:subseq(592045,106696)-genewise-prediction-1
NIVO01071179.1:subseq(592045,106696)	GeneWise	cds	89884	89946	0.00	+	0	NIVO01071179.1:subseq(592045,106696)-genewise-prediction-1
//

genewise output
Score 256.52 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000001_1.0  110 FMQGNRPLVLNFGSCTXPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAH 
                     F+ GNRPLVLNFGSCTXPSF+FKFDQFKRLIEDF S+ADFL+IYIEEAH 
                     FVLGNRPLVLNFGSCTXPSFIFKFDQFKRLIEDFGSVADFLIIYIEEAH 
NIVO01071179.1-56696 tgtgaactgcatgatatcttatatgctaacaggtgtgggtcaatagggc 
                     tttgagctttatgggcgcctttataatagttaatgctcattttataaca 
                     ttaccacgggttatccatattcatcacgattatttcaattcctccaaat 


SPP00000001_1.0  159 AS                          GWAFKNNMDIRNHQNLQDRLQ 
                     AS                          GWAFKNN+DI+NH+NLQDRL+ 
                     AS          D:D[gat]        GWAFKNNVDIKNHRNLQDRLR 
NIVO01071179.1-56549 gtGGTAAAAA  Intron 1   CAGATgtgtaaaggaaaccaccgctc 
                     cc <1-----[56542:52495]-1>  ggctaaatataaagataagtg 
                     aa                          cgttgccgccgtcgtcgccgg 


SPP00000001_1.0  183 AAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYK     
                     AAHLLL RSPQCPVVVDTM+NQSS  YAALPERLY+++EGRILYK     
                     AAHLLLDRSPQCPVVVDTMKNQSSSCYAALPERLYVLREGRILYK     
NIVO01071179.1-52429 ggccccgaacctcggggaaaacaatttggccgcctgccggaacta     
                     ccatttaggcagctttactaaaggcgacctcagtattgaggttaa     
                     accgggcgccgccggacaggcgccgccaagaggccgcggcgcgcg     


SPP00000001_1.0  228                        GKSGPWNYNPEEVRAVLEKLHS     
                                            GK GPWNY+PEEVRAVLEKLHS     
                                            GKPGPWNYHPEEVRAVLEKLHS     
NIVO01071179.1-52294 GTGGGGA  Intron 2   CAGgacgctatccgggcggcgacca     
                     <0-----[52294:50066]-0>gacgcgaaacaatgcttaatag     
                                            tatttgcctagattttgagcct     


//
Making a D in phase 1 intron
>NIVO01071179.1:subseq(592045,106696).pep
FVLGNRPLVLNFGSCTXPSFIFKFDQFKRLIEDFGSVADFLIIYIEEAHASDGWAFKNNV
DIKNHRNLQDRLRAAHLLLDRSPQCPVVVDTMKNQSSSCYAALPERLYVLREGRILYKGK
PGPWNYHPEEVRAVLEKLHS
//
>NIVO01071179.1:subseq(592045,106696).[56696:49998].sp
TTTGTTTTAGGCAACAGACCCTTGGTGCTGAATTTTGGAAGTTGCACCTGACCTTCATTT
ATTTTCAAATTTGACCAATTCAAGAGACTTATTGAAGATTTTGGTTCCGTAGCAGATTTT
CTCATCATTTACATCGAAGAAGCACATGCATCAGATGGCTGGGCTTTTAAGAACAACGTG
GACATCAAGAATCACCGGAATCTCCAGGACCGCTTGCGGGCAGCCCACCTGCTGCTGGAC
AGGAGCCCCCAGTGCCCCGTGGTGGTAGACACAATGAAGAACCAGAGCAGCTCGTGCTAC
GCAGCACTGCCAGAGCGGCTCTACGTGCTCCGGGAGGGCAGGATCCTGTACAAGGGTAAA
CCTGGTCCTTGGAACTACCATCCAGAGGAAGTTCGTGCTGTTCTGGAAAAGCTCCACAGT
//
NIVO01071179.1:subseq(592045,106696)	GeneWise	match	56696	50000	256.52	-	.	NIVO01071179.1:subseq(592045,106696)-genewise-prediction-1
NIVO01071179.1:subseq(592045,106696)	GeneWise	cds	56696	56543	0.00	-	0	NIVO01071179.1:subseq(592045,106696)-genewise-prediction-1
NIVO01071179.1:subseq(592045,106696)	GeneWise	intron	56542	52495	0.00	-	.	NIVO01071179.1:subseq(592045,106696)-genewise-prediction-1
NIVO01071179.1:subseq(592045,106696)	GeneWise	cds	52494	52295	0.00	-	2	NIVO01071179.1:subseq(592045,106696)-genewise-prediction-1
NIVO01071179.1:subseq(592045,106696)	GeneWise	intron	52294	50066	0.00	-	.	NIVO01071179.1:subseq(592045,106696)-genewise-prediction-1
NIVO01071179.1:subseq(592045,106696)	GeneWise	cds	50065	50000	0.00	-	0	NIVO01071179.1:subseq(592045,106696)-genewise-prediction-1
//