Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q ../DI1-human.fa -t DI1-NIVO01071179.1.subseq]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) # Homo sapiens # Complete
        Target: NIVO01071179.1:subseq(592045,106696) Ammotragus lervia isolate NAZ scaffold350633_len810912_cov72, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 647
   Query range: 109 -> 249
  Target range: 56696 -> 49999

   110 : PheMetGlnGlyAsnArgProLeuValLeuAsnPheGlySerCysThrUnkProSerPhe :   129
         |||:!:  !|||||||||||||||||||||||||||||||||||||||   |||||||||
         PheValLeuGlyAsnArgProLeuValLeuAsnPheGlySerCysThr***ProSerPhe
 56696 : TTTGTTTTAGGCAACAGACCCTTGGTGCTGAATTTTGGAAGTTGCACCTgaccttcattt : 56639

   130 : MetPheLysPheAspGlnPheLysArgLeuIleGluAspPheSerSerIleAlaAspPhe :   149
         :::|||||||||||||||||||||||||||||||||||||||.!!|||:!!|||||||||
         IlePheLysPheAspGlnPheLysArgLeuIleGluAspPheGlySerValAlaAspPhe
 56638 : attttcaaatttgacCAATTCAAGAGACTTATTGAAGATTTTGGTTCCGTAGCAGATTTT : 56579

   150 : LeuValIleTyrIleGluGluAlaHisAlaSer{A}  >>>> Target Intron 1 > :   161
         |||:!!|||||||||||||||||||||||||||{|}           4048 bp      
         LeuIleIleTyrIleGluGluAlaHisAlaSer{A}++                      
 56578 : CTCATCATTTACATCGAAGAAGCACATGCATCA{G}gt...................... : 56540

   162 : >>>  {sp}GlyTrpAlaPheLysAsnAsnMetAspIleArgAsnHisGlnAsnLeuGln :   178
              {||}|||||||||||||||||||||:!!||||||!:!||||||!:!|||||||||
            ++{sp}GlyTrpAlaPheLysAsnAsnValAspIleLysAsnHisArgAsnLeuGln
 56539 : ...ag{AT}GGCTGGGCTTTTAAGAACAACGTGGACATCAAGAATCACCGGAATCTCCAG : 52444

   179 : AspArgLeuGlnAlaAlaHisLeuLeuLeuAlaArgSerProGlnCysProValValVal :   198
         |||||||||!:!||||||||||||||||||! !|||||||||||||||||||||||||||
         AspArgLeuArgAlaAlaHisLeuLeuLeuAspArgSerProGlnCysProValValVal
 52443 : GACCGCTTGCGGGCAGCCCACCTGCTGCTGGACAGGAGCCCCCAGTGCCCCGTGGTGGTA : 52384

   199 : AspThrMetGlnAsnGlnSerSerGlnLeuTyrAlaAlaLeuProGluArgLeuTyrIle :   218
         |||||||||:!!||||||||||||..!! !|||||||||||||||||||||||||||:!:
         AspThrMetLysAsnGlnSerSerSerCysTyrAlaAlaLeuProGluArgLeuTyrVal
 52383 : GACACAATGAAGAACCAGAGCAGCTCGTGCTACGCAGCACTGCCAGAGCGGCTCTACGTG : 52324

   219 : IleGlnGluGlyArgIleLeuTyrLys  >>>> Target Intron 2 >>>>  GlyL :   229
         :!!!:!|||||||||||||||||||||           2229 bp           ||||
         LeuArgGluGlyArgIleLeuTyrLys++                         ++GlyL
 52323 : CTCCGGGAGGGCAGGATCCTGTACAAGgt.........................agGGTA : 50062

   230 : ysSerGlyProTrpAsnTyrAsnProGluGluValArgAlaValLeuGluLysLeuHisS :   249
         || !!|||||||||||||||:!!|||||||||||||||||||||||||||||||||||||
         ysProGlyProTrpAsnTyrHisProGluGluValArgAlaValLeuGluLysLeuHisS
 50061 : AACCTGGTCCTTGGAACTACCATCCAGAGGAAGTTCGTGCTGTTCTGGAAAAGCTCCACA : 50002

   250 : er :   249
         ||
         er
 50001 : GT : 50000

vulgar: SPP00000001_1.0 109 249 . NIVO01071179.1:subseq(592045,106696) 56696 49999 - 647 M 51 153 S 0 1 5 0 2 I 0 4044 3 0 2 S 1 2 M 66 198 5 0 2 I 0 2225 3 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
NIVO01071179.1:subseq(592045,106696)	exonerate:protein2genome:local	gene	50000	56696	647	-	.	gene_id 1 ; sequence SPP00000001_1.0 ; gene_orientation +
NIVO01071179.1:subseq(592045,106696)	exonerate:protein2genome:local	cds	56543	56696	.	-	.	
NIVO01071179.1:subseq(592045,106696)	exonerate:protein2genome:local	exon	56543	56696	.	-	.	insertions 0 ; deletions 0
NIVO01071179.1:subseq(592045,106696)	exonerate:protein2genome:local	splice5	56541	56542	.	-	.	intron_id 1 ; splice_site "gt"
NIVO01071179.1:subseq(592045,106696)	exonerate:protein2genome:local	intron	52495	56542	.	-	.	intron_id 1
NIVO01071179.1:subseq(592045,106696)	exonerate:protein2genome:local	splice3	52495	52496	.	-	.	intron_id 0 ; splice_site "AG"
NIVO01071179.1:subseq(592045,106696)	exonerate:protein2genome:local	cds	52295	52494	.	-	.	
NIVO01071179.1:subseq(592045,106696)	exonerate:protein2genome:local	exon	52295	52494	.	-	.	insertions 0 ; deletions 0
NIVO01071179.1:subseq(592045,106696)	exonerate:protein2genome:local	splice5	52293	52294	.	-	.	intron_id 2 ; splice_site "GT"
NIVO01071179.1:subseq(592045,106696)	exonerate:protein2genome:local	intron	50066	52294	.	-	.	intron_id 2
NIVO01071179.1:subseq(592045,106696)	exonerate:protein2genome:local	splice3	50066	50067	.	-	.	intron_id 1 ; splice_site "AG"
NIVO01071179.1:subseq(592045,106696)	exonerate:protein2genome:local	cds	50000	50065	.	-	.	
NIVO01071179.1:subseq(592045,106696)	exonerate:protein2genome:local	exon	50000	50065	.	-	.	insertions 0 ; deletions 0
NIVO01071179.1:subseq(592045,106696)	exonerate:protein2genome:local	similarity	50000	56696	647	-	.	alignment_id 1 ; Query SPP00000001_1.0 ; Align 56697 110 153 ; Align 52493 162 198 ; Align 50066 228 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis