TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 20,089 sequences; 1,310,797,575 total letters Query= SPP00001061_2.0 # Protein # Thioredoxin reductase (TXNRD) # Chicken Length=513 Score E Sequences producing significant alignments: (Bits) Value NOIK01000229.1 Anas zonorhyncha breed spot-billed scaffold231, w... 137 2e-43 NOIK01000508.1 Anas zonorhyncha breed spot-billed scaffold510, w... 162 5e-40 NOIK01005596.1 Anas zonorhyncha breed spot-billed scaffold5714, ... 82.8 8e-15 NOIK01000141.1 Anas zonorhyncha breed spot-billed scaffold143, w... 80.1 6e-14 NOIK01000195.1 Anas zonorhyncha breed spot-billed scaffold197, w... 49.3 2e-04 >NOIK01000229.1 Anas zonorhyncha breed spot-billed scaffold231, whole genome shotgun sequence Length=1416433 Score = 137 bits (344), Expect(2) = 2e-43, Method: Compositional matrix adjust. Identities = 63/76 (83%), Positives = 70/76 (92%), Gaps = 0/76 (0%) Frame = -2 Query 194 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQDMANKIGEY 253 SDDLFSLPYCPGKTL+VGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQ+MA KIG + Sbjct 45414 SDDLFSLPYCPGKTLIVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQEMAEKIGAH 45235 Query 254 MEEHGIKFIREFVPIK 269 ME HG+ FIR+ +P + Sbjct 45234 METHGVTFIRKCIPTQ 45187 Score = 63.5 bits (153), Expect(2) = 2e-43, Method: Compositional matrix adjust. Identities = 28/42 (67%), Positives = 35/42 (83%), Gaps = 0/42 (0%) Frame = -3 Query 155 KATNKRGVEKLYTAERFLIATGERPRYLGIPGDKEYCISSDD 196 +ATN++G +TAE F++ATGERPRYLGIPGDKEYCI+ D Sbjct 45635 QATNRKGQVTYHTAETFVLATGERPRYLGIPGDKEYCITR*D 45510 Score = 86.3 bits (212), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 39/46 (85%), Positives = 42/46 (91%), Gaps = 0/46 (0%) Frame = -1 Query 447 QRVIGFHVLGPNAGEVTQGFAAAMKCGLTKDQLDSTIGIHPVCAEV 492 RV+GFHVLGPNAGEVTQGFAAA+KCGLTK+ LD TIGIHP CAEV Sbjct 40180 NRVVGFHVLGPNAGEVTQGFAAAIKCGLTKELLDETIGIHPTCAEV 40043 Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 38/54 (70%), Positives = 47/54 (87%), Gaps = 0/54 (0%) Frame = -1 Query 326 KTGKIPVDDMEQTNVPYIYAIGDILQDRLELTPVAIQAGRLLVQRLYAGSTLKC 379 + GKIPV++ EQTNVPY+YAIGDIL+ +LELTPVAIQAG+LL +RLY GS+ K Sbjct 43369 RNGKIPVNEEEQTNVPYVYAIGDILEGKLELTPVAIQAGKLLARRLYGGSSTKV 43208 Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 35/49 (71%), Positives = 41/49 (84%), Gaps = 0/49 (0%) Frame = -3 Query 108 VKHNWMTMTESVQNYIGSLNWGYRVALREKKVTYENAYGEFVGPHTVKA 156 VKHNW M E++QNYIGSLNWGYR++LREK VTY N+YGEFV PH +K Sbjct 47171 VKHNWEIMVEAIQNYIGSLNWGYRLSLREKSVTYLNSYGEFVEPHKIKV 47025 Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 35/40 (88%), Positives = 39/40 (98%), Gaps = 0/40 (0%) Frame = -2 Query 68 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRKFGWQFTEE 107 GLGGTCVNVGCIPKKLMHQAALLGQAL+DSRK+GWQ+ E+ Sbjct 47652 GLGGTCVNVGCIPKKLMHQAALLGQALKDSRKYGWQYEEQ 47533 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 27/40 (68%), Positives = 37/40 (93%), Gaps = 0/40 (0%) Frame = -1 Query 376 TLKCDYVNVPTTVFTPLEYGACGYSEENAIQKFGEENIEV 415 + +CDY+NVPTTVFTPLEYG+CG +EE AI+K+G++N+EV Sbjct 43021 SFQCDYINVPTTVFTPLEYGSCGLAEEKAIEKYGKQNLEV 42902 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 26/33 (79%), Positives = 27/33 (82%), Gaps = 0/33 (0%) Frame = -3 Query 414 EVYHSHFWPLEWTVPSRDNNKCYAKIICNIQDN 446 +VYHS FWPLEWTVP RDNN CYAKIIC DN Sbjct 42056 QVYHSLFWPLEWTVPGRDNNTCYAKIICAKHDN 41958 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/26 (81%), Positives = 24/26 (92%), Gaps = 0/26 (0%) Frame = -3 Query 301 VLLAIGRDACTRKIGLDKVGVKINEK 326 VL+AIGRDACTR IGL+ +GVKINEK Sbjct 44405 VLIAIGRDACTRNIGLETIGVKINEK 44328 Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 29/37 (78%), Gaps = 0/37 (0%) Frame = -3 Query 268 IKVEQIEEGTPGRLKVTAKSTKDDQVIEEEYNTVLLA 304 I+VE++E+GTPGRLKVTA+ T+ + EYNTV ++ Sbjct 44966 IQVEKLEDGTPGRLKVTAQFTEGPETFVGEYNTVSIS 44856 Score = 35.0 bits (79), Expect = 4.8, Method: Compositional matrix adjust. Identities = 14/17 (82%), Positives = 15/17 (88%), Gaps = 0/17 (0%) Frame = -2 Query 52 VMVLDFVTPTPLGNSWG 68 VMVLD+V PTPLG SWG Sbjct 48507 VMVLDYVVPTPLGTSWG 48457 >NOIK01000508.1 Anas zonorhyncha breed spot-billed scaffold510, whole genome shotgun sequence Length=971122 Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 78/79 (99%), Positives = 78/79 (99%), Gaps = 0/79 (0%) Frame = -3 Query 192 ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQDMANKIG 251 SSDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQDMANKIG Sbjct 914159 FSSDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQDMANKIG 913980 Query 252 EYMEEHGIKFIREFVPIKV 270 EYMEEHGIKFIREFVPIKV Sbjct 913979 EYMEEHGIKFIREFVPIKV 913923 Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 85/128 (66%), Positives = 85/128 (66%), Gaps = 42/128 (33%) Frame = -2 Query 108 VKHNWMTMTESVQNYIGSLNWGYRVALREKKVTYENAYGEFVGPHTVK------------ 155 VKHNWMTMTESVQNYIGSLNWGYRVALREKKVTYENAYGEFV PHTVK Sbjct 916458 VKHNWMTMTESVQNYIGSLNWGYRVALREKKVTYENAYGEFVQPHTVKVLPSPVFWVFL* 916279 Query 156 ------------------------------ATNKRGVEKLYTAERFLIATGERPRYLGIP 185 ATNKRGVEKLYTAERFLIATGERPRYLGIP Sbjct 916278 CFLNTGVRQRIIFPVVGLQNTHFGLLLCSQATNKRGVEKLYTAERFLIATGERPRYLGIP 916099 Query 186 GDKEYCIS 193 GDKEYCIS Sbjct 916098 GDKEYCIS 916075 Score = 87.8 bits (216), Expect(2) = 1e-21, Method: Compositional matrix adjust. Identities = 40/40 (100%), Positives = 40/40 (100%), Gaps = 0/40 (0%) Frame = -3 Query 68 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRKFGWQFTEE 107 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRKFGWQFTEE Sbjct 917450 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRKFGWQFTEE 917331 Score = 39.7 bits (91), Expect(2) = 1e-21, Method: Compositional matrix adjust. Identities = 17/17 (100%), Positives = 17/17 (100%), Gaps = 0/17 (0%) Frame = -1 Query 52 VMVLDFVTPTPLGNSWG 68 VMVLDFVTPTPLGNSWG Sbjct 917614 VMVLDFVTPTPLGNSWG 917564 Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 51/69 (74%), Positives = 57/69 (83%), Gaps = 0/69 (0%) Frame = -3 Query 319 VGVKINEKTGKIPVDDMEQTNVPYIYAIGDILQDRLELTPVAIQAGRLLVQRLYAGSTLK 378 + V N +TGKIPV+D+EQTNVPYIYAIGDILQDRLELTPVAIQAGRLLVQRLY G+T K Sbjct 908096 IFVDANHRTGKIPVNDVEQTNVPYIYAIGDILQDRLELTPVAIQAGRLLVQRLYGGATTK 907917 Query 379 CDYVNVPTT 387 +P T Sbjct 907916 VSNQLLPNT 907890 Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 51/69 (74%), Positives = 57/69 (83%), Gaps = 0/69 (0%) Frame = -3 Query 319 VGVKINEKTGKIPVDDMEQTNVPYIYAIGDILQDRLELTPVAIQAGRLLVQRLYAGSTLK 378 + V N +TGKIPV+D+EQTNVPYIYAIGDILQDRLELTPVAIQAGRLLVQRLY G+T K Sbjct 904295 IFVDANHRTGKIPVNDVEQTNVPYIYAIGDILQDRLELTPVAIQAGRLLVQRLYGGATTK 904116 Query 379 CDYVNVPTT 387 +P T Sbjct 904115 VSNQLLPNT 904089 Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 43/46 (93%), Positives = 46/46 (100%), Gaps = 0/46 (0%) Frame = -3 Query 447 QRVIGFHVLGPNAGEVTQGFAAAMKCGLTKDQLDSTIGIHPVCAEV 492 +RVIGFHVLGPNAGEVTQGFAAA+KCGLTK+QLDSTIGIHPVCAEV Sbjct 898364 ERVIGFHVLGPNAGEVTQGFAAAIKCGLTKEQLDSTIGIHPVCAEV 898227 Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 37/41 (90%), Positives = 39/41 (95%), Gaps = 0/41 (0%) Frame = -1 Query 375 STLKCDYVNVPTTVFTPLEYGACGYSEENAIQKFGEENIEV 415 +T +CDYVNVPTTVFTPLEYGACGYSEENAI KFGEENIEV Sbjct 902068 NTTQCDYVNVPTTVFTPLEYGACGYSEENAIAKFGEENIEV 901946 Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 31/34 (91%), Positives = 33/34 (97%), Gaps = 0/34 (0%) Frame = -1 Query 413 IEVYHSHFWPLEWTVPSRDNNKCYAKIICNIQDN 446 +VYHSHFWPLEWTVPSRDNNKCYAKIICNI+DN Sbjct 900556 FQVYHSHFWPLEWTVPSRDNNKCYAKIICNIRDN 900455 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/32 (91%), Positives = 30/32 (94%), Gaps = 0/32 (0%) Frame = -2 Query 1 VQAHKEDKPQKVLEMNGHTAVPHSYDYDLIVI 32 VQAHKED PQ +LEMNGHTAVPHSYDYDLIVI Sbjct 920433 VQAHKEDNPQSLLEMNGHTAVPHSYDYDLIVI 920338 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/31 (87%), Positives = 29/31 (94%), Gaps = 0/31 (0%) Frame = -1 Query 271 EQIEEGTPGRLKVTAKSTKDDQVIEEEYNTV 301 EQIEEGTPGRLKVTAKSTK ++VIE EYNTV Sbjct 911578 EQIEEGTPGRLKVTAKSTKGNEVIEGEYNTV 911486 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/32 (84%), Positives = 29/32 (91%), Gaps = 0/32 (0%) Frame = -1 Query 301 VLLAIGRDACTRKIGLDKVGVKINEKTGKIPV 332 VLLAIGRDACTRKIGLDKVGVKINEK + P+ Sbjct 906025 VLLAIGRDACTRKIGLDKVGVKINEK*EETPL 905930 Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/32 (84%), Positives = 29/32 (91%), Gaps = 0/32 (0%) Frame = -3 Query 301 VLLAIGRDACTRKIGLDKVGVKINEKTGKIPV 332 VLLAIGRDACTRKIGLDKVGVKINEK + P+ Sbjct 909809 VLLAIGRDACTRKIGLDKVGVKINEK*EETPL 909714 Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust. Identities = 16/20 (80%), Positives = 18/20 (90%), Gaps = 0/20 (0%) Frame = -1 Query 494 TTLSITKRSGENTLQSGCUG 513 TTLS+TKRSGENTL +GC G Sbjct 895063 TTLSVTKRSGENTLMAGC*G 895004 >NOIK01005596.1 Anas zonorhyncha breed spot-billed scaffold5714, whole genome shotgun sequence Length=5903 Score = 82.8 bits (203), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 38/39 (97%), Positives = 39/39 (100%), Gaps = 0/39 (0%) Frame = +3 Query 155 KATNKRGVEKLYTAERFLIATGERPRYLGIPGDKEYCIS 193 +ATNKRGVEKLYTAERFLIATGERPRYLGIPGDKEYCIS Sbjct 45 QATNKRGVEKLYTAERFLIATGERPRYLGIPGDKEYCIS 161 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/32 (84%), Positives = 29/32 (91%), Gaps = 0/32 (0%) Frame = +2 Query 301 VLLAIGRDACTRKIGLDKVGVKINEKTGKIPV 332 VLLAIGRDACTRKIGLDKVGVKINEK + P+ Sbjct 5456 VLLAIGRDACTRKIGLDKVGVKINEK*EETPL 5551 >NOIK01000141.1 Anas zonorhyncha breed spot-billed scaffold143, whole genome shotgun sequence Length=2111377 Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 34/46 (74%), Positives = 38/46 (83%), Gaps = 0/46 (0%) Frame = -2 Query 67 WGLGGTCVNVGCIPKKLMHQAALLGQALQDSRKFGWQFTEEVKHNW 112 WGLGGTCVNVGCIPKKLMHQAALLG AL+D++ +GW V HNW Sbjct 1208910 WGLGGTCVNVGCIPKKLMHQAALLGSALKDAQCYGWNIAHPVHHNW 1208773 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/46 (54%), Positives = 33/46 (72%), Gaps = 0/46 (0%) Frame = -3 Query 306 GRDACTRKIGLDKVGVKINEKTGKIPVDDMEQTNVPYIYAIGDILQ 351 GR T+ + L+ VGVK N +TGKI VD E T+VP+IYA+GDI + Sbjct 1191647 GRAPDTKALNLEAVGVKTNSETGKIIVDASEATSVPHIYAVGDITE 1191510 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 37/61 (61%), Gaps = 1/61 (2%) Frame = -3 Query 355 ELTPVAIQAGRLLVQRLYAGSTLKCDYVNVPTTVFTPLEYGACGYSEENAIQKFGEENIE 414 EL +Q L + + +TL D VPTTVFTPLEYG G SEE A+Q +G +NIE Sbjct 1185980 ELLFSVMQNSPLQLLHMVHSNTLFPDE-QVPTTVFTPLEYGCVGLSEEKAVQCYGSDNIE 1185804 Query 415 V 415 V Sbjct 1185803 V 1185801 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 3/64 (5%) Frame = -2 Query 244 QDMANKIGEYMEEHGIKFIREFVPIKVEQIEEGTPGRLKVTAKSTKDDQVIEEEYNTVLL 303 Q MA+ + EYME +G KF+++ +P KVE++E RL VT K+T + ++TV+ Sbjct 1198440 QQMASLVTEYMESYGTKFLKKCIPTKVEKLE---SNRLHVTWKNTDSGTEEADSFDTVMW 1198270 Query 304 AIGR 307 A+G+ Sbjct 1198269 AVGK 1198258 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 22/30 (73%), Positives = 26/30 (87%), Gaps = 0/30 (0%) Frame = -2 Query 215 VALECAGFLAGLGLDVTVMVRSILLRGFDQ 244 ++LECAGFL G+GLD VM+RSI LRGFDQ Sbjct 1201044 ISLECAGFLTGIGLDTMVMMRSIPLRGFDQ 1200955 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/43 (56%), Positives = 28/43 (65%), Gaps = 0/43 (0%) Frame = -2 Query 471 KCGLTKDQLDSTIGIHPVCAEVFTTLSITKRSGENTLQSGCUG 513 +CG T QL T+GIHP CAE T L ITKRSG + +GC G Sbjct 1180701 RCGATYPQLMKTVGIHPTCAEEITKLHITKRSGLDATVTGC*G 1180573 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Frame = -3 Query 423 LEWTVPSRDNNKCYA-KIICNIQDNQRVIGFHVLGPNAGEVTQGFAAAMK 471 L V +D Y +++C + QR++G H +GPNAGEV QGFA +K Sbjct 1183112 LSLDVLRKDFYVMYCFQMVCLREREQRILGLHFIGPNAGEVIQGFALGIK 1182963 Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust. Identities = 20/36 (56%), Positives = 24/36 (67%), Gaps = 0/36 (0%) Frame = -3 Query 351 QDRLELTPVAIQAGRLLVQRLYAGSTLKCDYVNVPT 386 Q R ELTP AI AG+LL QRL+ S+ DY NV + Sbjct 1186202 QGRPELTPTAIAAGKLLAQRLFGQSSELMDYDNVSS 1186095 Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust. Identities = 15/28 (54%), Positives = 22/28 (79%), Gaps = 0/28 (0%) Frame = -3 Query 115 MTESVQNYIGSLNWGYRVALREKKVTYE 142 M ++VQNY+ SLNWG+RV L++K + E Sbjct 1208453 MAQAVQNYVKSLNWGHRVQLQDK*IRLE 1208370 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 0/26 (0%) Frame = -3 Query 414 EVYHSHFWPLEWTVPSRDNNKCYAKI 439 +VYH+ + PLE+TV RD +CY K+ Sbjct 1184975 QVYHAFYKPLEFTVAERDATQCYMKV 1184898 >NOIK01000195.1 Anas zonorhyncha breed spot-billed scaffold197, whole genome shotgun sequence Length=1814064 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/49 (45%), Positives = 30/49 (61%), Gaps = 0/49 (0%) Frame = -1 Query 448 RVIGFHVLGPNAGEVTQGFAAAMKCGLTKDQLDSTIGIHPVCAEVFTTL 496 +V+G H+ G E+ QGFA A+K G TK D+T+ IHP AE T+ Sbjct 230925 KVVGLHMQGLGCDEMLQGFAVAIKMGATKADFDNTVAIHPTSAEELVTM 230779 Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust. Identities = 24/62 (39%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = -1 Query 341 PYIYAIGDILQDRLELTPVAIQAGRLLVQRLYAGST-LKCDYVNVPTTVFTPLEYGACGY 399 P + G + L L+ VAI AGR L RL+ G DY N+PT VF+ G G Sbjct 231501 PLVLQPGQV-SGSLCLSVVAIAAGRKLAHRLFGGQRDAHLDYSNIPTVVFSHPPIGTVGL 231325 Query 400 SE 401 +E Sbjct 231324 TE 231319 Lambda K H a alpha 0.319 0.137 0.416 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 165902930812 Database: genome.fa Posted date: Oct 23, 2017 5:50 PM Number of letters in database: 1,310,797,575 Number of sequences in database: 20,089 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40