_________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 1e-22 Query name: gi|170671712|ref|NP_001116249.1| thioredoxin reductase 3 [Gallus gallus] Query range: 2-606 (total 606) Target: /data/www-rg/seblastian_results/464891674/tempfiles/temptarget.fasta Chromosome: NOIK01000229.1:subseq_1,95413_ Strand: - Positions: -Exon 1 58148 58267 -Exon 2 51634 51694 -Exon 3 50567 50676 -Exon 4 49881 49994 -Exon 5 48458 48530 -Exon 6 47531 47650 -Exon 7 47027 47169 -Exon 8 45516 45631 -Exon 9 45186 45411 -Exon 10 44867 44959 -Exon 11 44328 44404 -Exon 12 43210 43366 -Exon 13 42904 43011 -Exon 14 41957 42052 -Exon 15 40045 40179 -Exon 16 39689 39754 Redox box: no Query PPPGQTQLPDWDGLKLRVRTLIATHRVMIFSKSYCPYCHR <---Intron---> VKELFSSLGVQYYALELDVTD <---Intron---> DGPSIQQ |||||||||||||||||||||||/||||||||||||||// < 6453bp > |||||||/||/||||||||| < 957bp > ||||||| Target PPPGQTQLPDWDGLKLRVRTLIASHRVMIFSKSYCPYCNQ VKELFSSMGVEYYALELDVTA DGPSIQQ cccgcacccgtggtaccgcacagtccgaataaattcttac gagctatagggttgtgcggag ggcaacc cccgacatcagagtatgtgcttccagttttgagagcagaa taattgctgtaaactatatc cagcgtaa cggcacgcgcgccaaccggcgcccccggaccgcccccccg gaaccccgtagcttaagtaa ttacttga Query VLAELTNQRTVPNVFINGKHIGGCDATYK <---Intron---> AYENGTLQRILGDVKDAETYDYDLIVIGGGSGGLACSK <---Intron---> E |||||||||||||||/||||/|||||||| < 572bp > ||/|||||//|||||||||||||||/|||||||||||| < 1350bp > | Target VLAELTNQRTVPNVFVNGKHVGGCDATYK AYQNGTLQKLLGDVKDAETYDYDLIIIGGGSGGLACSK E gtggcaacaagcagtgagacgggtggata gtcagaccaccgggagggatgtgcaaagggtggcgtta g ttcatcaagctcatttagaatgggaccaa caaagctaattgataacacaaaattttgggcggtcgca a aaagattggagtcatgtagcaacttatcg ttgtaaggattgtcatgactttccttcttcatatttcg a Query AATLGKKVMVLDYVVPTPLGTSWG <---Intron---> LGGTCVNVGCIPKKLMHQAALLGQALKDSRAYGWQYDEQV <---Intron---> KHNW |||||||||||||||||||||||| < 807bp > |||||||||||||||||||||||||||||| |||||/||| < 361bp > |||| Target AATLGKKVMVLDYVVPTPLGTSWG LGGTCVNVGCIPKKLMHQAALLGQALKDSRKYGWQYEEQV KHNW ggatgaagagtgtggcaccgattg cggatgaggtacaacaccggccgcgcagtaatgtctggcg acat ccctgaattttaattccctgccg gtggcgtatggtcaattaaccttgactaacgaaggaaaaa taaag ttcgagaaggattttagttaccg tttcctatatttaggagtaaatgagacatagatcgataaa taccg Query EIMVEAVQNYIGSLNWGYRLSLREKSVTYQNSYGEFVEPHKIK <---Intron---> ATNRKGQVTYHTAETFVLATGERPRYLGIPGDKEYCITS < ||||||/|||||||||||||||||||||| ||||||||||||| < 1395bp > ||||||||||||||||||||||||||||||||||||||| < Target EIMVEAIQNYIGSLNWGYRLSLREKSVTYLNSYGEFVEPHKIK ATNRKGQVTYHTAETFVLATGERPRYLGIPGDKEYCITS gaagggacatagttatgtctttagatgatcattggtggccaaa gaaaagcgatcaggatgcgaggacatcgacggagttaaa atttactaaatgctaggagtctgaactcatacagattacaata ccagagatcaaccactttccgagcgatgtcgaaaagtcg gcgaaatacctttacgttagcaggatgacatttaactaacatg attaaaaactccagttcgaaaagtgtttccataattta Query ---Intron---> DDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQEMAEKIGAHMETHGVTFIRKFVPTQ <---Intron 104bp > ||||||||||||||/||||||||||||||||||||||||||||||||||||||||||||||||||||||| /||| < 226bp Target DDLFSLPYCPGKTLIVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQEMAEKIGAHMETHGVTFIRKCIPTQ ggcttccttcgaacagggttggcgtggtcggcgcggagagctacccgtgcgaggaaggcagacggataaatacac aattctcagcgactttgccatctagcgttcgtgtatctttgctttggtaaatcaatgcatacagtcttgagtcca ttccccgttttcagatgttttggggtaattttatatcaaggtcattgctcaagaaaatccgaattaaccagtattg Query ---> VERLEDGTPGRLKVTAKSTEGPEFFEGEYNT <---Intron---> VLIAIGRDACTRNIGLQTIGVKINEK <---Intron---> NGKVPV > ||/|||||||||||||/ ||||| | ||||| < 462bp > ||||||||||||||||/||||||||| < 961bp > |||/|| Target VEKLEDGTPGRLKVTAQFTEGPETFVGEYNT VLIAIGRDACTRNIGLETIGVKINEK NGKIPV ggatgggacgacagagctaggcgatgggtaa gtagagcggtaaaagtgaaggaaaga agaacg taataagccggtatccatcagcacttgaaac tttctggacgcgatgtactgtataaa agatct tagggtcgtaaaaggagttgaaattgaatct tgatttttgtcatttaggttcactg gtgaata Query NDEERTNVPYVYAIGDILDGKLELTPVAIQAGKLLARRLYGGSSTK <---Intron---> CDYINVPTTVFTPLEYGSCGLAEEKAIEEYGKQNLE < |/||/|||||||||||||/||||||||||||||||||||||||||| < 198bp > ||||||||||||||||||||||||||||/||||||| < Target NEEEQTNVPYVYAIGDILEGKLELTPVAIQAGKLLARRLYGGSSTK CDYINVPTTVFTPLEYGSCGLAEEKAIEKYGKQNLE agggcaagctgtgaggatggacgcacggacggaccgcactggataa tgtaagcaagtactgtgatgcgggagagatgacatg aaaaacatcatactgattagatatcctctacgattcggtagggcca gaatatcccttcctaaggggtcaaactaaagaaata taaaactgttttttgtcggagtattatataagacaccgcttttcag tttctaaaagttcagtcctgatagacaaatagatgg Query ---Intron---> VYHSLFWPLEWTVPGRDNNTCYAKIICNKLDG <---Intron---> NRVVGFHVLGPNAGEVTQGFAAAIKCGLTKELLDETIG 851bp > ||||||||||||||||||||||||||| | | < 1777bp > |||||||||||||||||||||||||||||||||||||| Target VYHSLFWPLEWTVPGRDNNTCYAKIICAKHDN NRVVGFHVLGPNAGEVTQGFAAAIKCGLTKELLDETIG gtcatttccgtagcgcgaaattgaaatgacga acgggtcgcgcaggggacgtgggaatgcaagtcggaag taagttgctagctcggaaacgacattgcaaaa agttgtattgcacgatcagtccctaggtcaattaactg ttctacgatagaaacatctttcagtcttacct ctgaattttattttatcgttttaaattccaaaataatt Query IHPTCAE <---Intron---> VFTTMDITKSSGQDITQRGCUG ||||||| < 290bp > |||||||||||||||||||||| Target IHPTCAE VFTTMDITKSSGQDITQRGCUG accatgg gtaaagaaattgcgaaccgttg taccgca ttcctatcaccgaatcaggggg ctattag gctggttaataaacctagccat * Sequence until next stop: TAA * Distance CDS-SECIS: 229 ; UGA-SECIS: 232