_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

Blastx evalue: 1e-21
Query name: gi|844287339|gb|AKN04699.1| thioredoxin reductase 1, partial [Meleagris gallopavo]
Query range: 1-341  (total 341)

Target: /data/www-rg/seblastian_results/325793585/tempfiles/temptarget.fasta
Chromosome: NOIK01000508.1:subseq_863923,100236_ Strand: -
Positions:
-Exon 1  52150        52214
-Exon 2  50003        50228
-Exon 3  47566        47658
-Exon 4  42026        42102
-Exon 5  40193        40349
-Exon 6  38026        38133
-Exon 7  36532        36627
-Exon 8  34307        34441
-Exon 9  31081        31146

Redox box: no

Query   IATGERPRYLGIPEDKEYRISS <---Intron---> DDLFSLPYCPGKTLVVGASYVALECAGFLVGLGLDVTVMVRSILLRGFDQDMANKIGEYMEE
       ||||||||||||| |||| ||| <   1921bp   > ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Target  IATGERPRYLGIPGDKEYCISS                DDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQDMANKIGEYMEE
       agaggacctcgacggagttaaa                ggcttccttcgaacggggttggtgtggtcggcgtggagagataccagtgcgagaaaggtagg
       tccgagcgatgtcgaaaagtgg                aattctcagcgactttgccatctagcgttcgtgtatctttgctttggtaaatcaatgaataa
       ttttagaccgtctacgacccc                ttttccgtctagacggtatctgcgataattactgatcgaggacttaaatcgtgacattacgaa
                                                                                                           

Query   HGIKFIREFVPIK <---Intron---> IEQIEEGTPGRLKVTAKSTKDDKVIEEEYNT <---Intron---> VLLAIGRDACTRKIGLDKVGVKIN
       ||||||||||||| <   2344bp   >  ||||||||||||||||||| //||| |||| <   5463bp   > ||||||||||||||||||||||||
Target  HGIKFIREFVPIK                FEQIEEGTPGRLKVTAKSTKGNEVIEGEYNT                VLLAIGRDACTRKIGLDKVGVKIN
       cgaataagtgcaa                tgcagggacgacagagataagaggagggtaa                gccgagaggtaaaagtgagggaaa
       agtattgattcta                taataagccggtatccaccagaattagaaac                tttctggacgcgatgtaatgtata
       tacaccagtggcg                cggtgaattaagatacgcaggtaatagactt                ggaataatataaattgcatagact
                                                                                                           

Query   EK <---Intron---> TGKIPVDDMEQTNVPYIYAIGDILQDRLELTPVAIQAGRLLVQRLYAGSTIK <---Intron---> CDYVNVPTTVFTPL
       || <   1676bp   > ||||||/|/||||||||||||||||||||||||||||||||||||| |/| | <   2059bp   > ||||||||||||||
Target  EK                TGKIPVNDVEQTNVPYIYAIGDILQDRLELTPVAIQAGRLLVQRLYGGATTK                CDYVNVPTTVFTPL
       ga                agaacgagggcaagctatgaggaccgacgcacggacggactgcactgggaaa                tgtgagcaagtact
       aa                cgatctaataacatcatactgattaagtatcctctacggtttagtaggccca                gaatatcccttcct
       a                aaaaatcttggaatgacccttataggcggacaagacgaaagatggtttgactg                tccgttacggctta
                                                                                                           

Query   EYGACGYSGENAIQKFGEENIE <---Intron---> VYHSHFWPLEWTVPSRDNNKCYAKIICNIQDN <---Intron---> ERVIGFHVLGPNAG
       |||||||| |||| |||||||| <   1398bp   > |||||||||||||||||||||||||||||/|| <   2090bp   > ||||||||||||||
Target  EYGACGYSEENAIAKFGEENIE                VYHSHFWPLEWTVPSRDNNKCYAKIICNIRDN                ERVIGFHVLGPNAG
       gtggtgttggagagatgggaag                gtcacttccgtagctagaaattgaaataacga                gagagtcgcgcagg
       aagcggacaaactcatgaaata                taagatgctagctccgaaaagacattgatgaa                agttgtattgcacg
       atactgtcagtaagatggactg                gttttcgagagtgacacccactggatcttatt                gacttctcccatta
                                                                                                           

Query   EVTQGFAAAMKCGLTKEQLDSTIGIHPVCAE <---Intron---> VFTTLSITKRSGESTLQSGCUG
       |||||||||/||||||||||||||||||||| <   3160bp   > ||||||/||||||/|| /||||
Target  EVTQGFAAAIKCGLTKEQLDSTIGIHPVCAE                VFTTLSVTKRSGENTLMAGCUG
       ggacgtgggaatgtaagccgaaagaccgtgg                gtaactgaactggaacaggttg
       atcagtccctaggtcaaatagctgtactgca                ttcctctcagcgaacttcgggg
       accactatttatagcaagacccaactactag                acctgcgtgtttattcgttcat
                                                                          * 
Sequence until next stop: 
TAA
* 

Distance CDS-SECIS: 233 ; UGA-SECIS: 236