TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           20,089 sequences; 1,310,797,575 total letters



Query= SPP00001060_2.0 # Protein # Selenoprotein U1 (SELENOU1) # Chicken

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

NOIK01000003.1  Anas zonorhyncha breed spot-billed scaffold3, who...    117   2e-27
NOIK01000009.1  Anas zonorhyncha breed spot-billed scaffold9, who...  35.0    1.5  


>NOIK01000003.1 Anas zonorhyncha breed spot-billed scaffold3, whole genome shotgun 
sequence
Length=11111658

 Score =   117 bits (292),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 57/61 (93%), Positives = 60/61 (98%), Gaps = 0/61 (0%)
 Frame = +3

Query  2        PEMSFLPDFGIFTMGMWSVGLGAVGAAITGIVLANTDLFLSKPEKATLEFLEAIELKTLG  61
                PEMSFLPDFGIFTMG+WSVGLGA+GAA+TGIVLANTDLFLSKPEKATLEFLE IELKTLG
Sbjct  5754579  PEMSFLPDFGIFTMGLWSVGLGAIGAAVTGIVLANTDLFLSKPEKATLEFLEEIELKTLG  5754758

Query  62       S  62
                S
Sbjct  5754759  S  5754761


 Score =   115 bits (287),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 56/60 (93%), Gaps = 0/60 (0%)
 Frame = +1

Query  136      FLDEKRSFYGPRKRKMMLSGFFRIGVWQNFFRAWKNGYSGNLEGEGFTLGGVYVIGAGRQ  195
                F   +RSFYGPR+RKMM+SGFFR GVWQNFFRAWKNGYSGNLEGEGFTLGGVYVIGAGRQ
Sbjct  5759932  FFSLQRSFYGPRRRKMMMSGFFRFGVWQNFFRAWKNGYSGNLEGEGFTLGGVYVIGAGRQ  5760111


 Score = 95.9 bits (237),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 48/52 (92%), Positives = 49/52 (94%), Gaps = 0/52 (0%)
 Frame = +3

Query  89       FLCREEASELSSLKPQLSKLGVPLYAVVKEKIGTEVEDFQHYFQGEIFLDEK  140
                FL   EASELSSLKPQLSKLGVPLYAVVKEKIGTEVEDFQHYF+GEIFLDEK
Sbjct  5758815  FLLS*EASELSSLKPQLSKLGVPLYAVVKEKIGTEVEDFQHYFKGEIFLDEK  5758970


 Score = 65.5 bits (158),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 32/32 (100%), Positives = 32/32 (100%), Gaps = 0/32 (0%)
 Frame = +3

Query  196      GVLLEHREKEFGDKVSLPSVLEAAEKIKPQAS  227
                GVLLEHREKEFGDKVSLPSVLEAAEKIKPQAS
Sbjct  5760255  GVLLEHREKEFGDKVSLPSVLEAAEKIKPQAS  5760350


 Score = 61.2 bits (147),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 31/48 (65%), Positives = 35/48 (73%), Gaps = 4/48 (8%)
 Frame = +3

Query  62       SEPRTFKASELWKKNGAVIMAVRRPGUFLCREE----ASELSSLKPQL  105
                +E RTFKA ELWKKNGAVIMAVRRPG FLCRE       +L ++ P L
Sbjct  5755260  TEQRTFKAGELWKKNGAVIMAVRRPG*FLCREVRVGFGDKLRAVMPHL  5755403


>NOIK01000009.1 Anas zonorhyncha breed spot-billed scaffold9, whole genome shotgun 
sequence
Length=7532100

 Score = 35.0 bits (79),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 29/97 (30%), Positives = 49/97 (51%), Gaps = 7/97 (7%)
 Frame = +3

Query  73       WKKNGAVIMAVRRPGUFLCREEASELSSLKPQLSKLGVPLYAVVKEKIGTEVEDFQHYFQ  132
                +KK+  V+  V+R    L R    E  S K QL +LG  L+++ K ++  ++   + Y +
Sbjct  2646882  YKKDMEVLERVQRRATKLVR--GLENKSYKEQLRELG--LFSLEKRRLKGDLITLRRYLK  2647049

Query  133      G---EIFLDEKRSFYGPRKRKMMLSGFFRIGVWQNFF  166
                G   E+ +       G R R  +L G FR+ + +NFF
Sbjct  2647050  GGCSEVGVGLFSHMSGDRMRLKLLQGCFRLDIRKNFF  2647160



Lambda      K        H        a         alpha
   0.320    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 46057186136


  Database: genome.fa
    Posted date:  Oct 23, 2017  5:50 PM
  Number of letters in database: 1,310,797,575
  Number of sequences in database:  20,089



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40