TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           20,089 sequences; 1,310,797,575 total letters



Query= SPP00001059_2.0 # Protein # Selenoprotein T (SELENOT) # Chicken

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

NOIK01000252.1  Anas zonorhyncha breed spot-billed scaffold254, w...  93.2    1e-19
NOIK01000039.1  Anas zonorhyncha breed spot-billed scaffold40, wh...  33.9    2.3  
NOIK01000005.1  Anas zonorhyncha breed spot-billed scaffold5, who...  33.1    4.5  
NOIK01000120.1  Anas zonorhyncha breed spot-billed scaffold122, w...  33.1    4.6  


>NOIK01000252.1 Anas zonorhyncha breed spot-billed scaffold254, whole genome 
shotgun sequence
Length=1472571

 Score = 93.2 bits (230),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%)
 Frame = -2

Query  87       RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKV  130
                RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKV
Sbjct  1070384  RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKV  1070253


 Score = 88.2 bits (217),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 41/41 (100%), Positives = 41/41 (100%), Gaps = 0/41 (0%)
 Frame = -3

Query  159      DVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMESMPHHRS  199
                DVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMESMPHHRS
Sbjct  1067878  DVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMESMPHHRS  1067756


 Score = 75.5 bits (184),  Expect = 8e-14, Method: Compositional matrix adjust.
 Identities = 37/40 (93%), Positives = 38/40 (95%), Gaps = 1/40 (3%)
 Frame = -2

Query  49       IC-VSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR  87
                +C VS GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR
Sbjct  1071575  VCSVS*GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR  1071456


 Score = 64.3 bits (155),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 29/30 (97%), Positives = 30/30 (100%), Gaps = 0/30 (0%)
 Frame = -1

Query  129      KVYACMMVFFLSNMIENQCMSTGAFEITLN  158
                +VYACMMVFFLSNMIENQCMSTGAFEITLN
Sbjct  1068804  QVYACMMVFFLSNMIENQCMSTGAFEITLN  1068715


>NOIK01000039.1 Anas zonorhyncha breed spot-billed scaffold40, whole genome shotgun 
sequence
Length=4758081

 Score = 33.9 bits (76),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 42/170 (25%), Positives = 71/170 (42%), Gaps = 52/170 (31%)
 Frame = -1

Query  65       VISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQW  124
                V+ +R    +++G+N+ P P  RH AS+ S   + L+G +              P+I Q+
Sbjct  2238438  VLEERPHQSQVQGDNHFPSP-ARHTASYTSQDAVGLLGHL------STLLTHIQPTIHQY  2238280

Query  125      GQENKVYACMMVF--FLSNMI--------ENQCMSTGAFEITLNDV-----PVWSKLESG  169
                 Q   V  C   F  FLS  +        + Q ++ G  E+   D+     P+   L+S 
Sbjct  2238279  SQ---VLLCQAAFQPFLSQPVALLGVIAPQVQDLALGLVELHAVDLSPLVQPIQILLQS-  2238112

Query  170      HLPSMQQ--------------------LVQILDNEMKLNVHMESMPHHRS  199
                 LP+++Q                    L+QI+D ++K     E  P HR+
Sbjct  2238111  -LPTLEQIDTLT*LGVISELTEGVLNALIQIIDEDIK-----EDRPQHRA  2237980


>NOIK01000005.1 Anas zonorhyncha breed spot-billed scaffold5, whole genome shotgun 
sequence
Length=12840807

 Score = 33.1 bits (74),  Expect = 4.5, Method: Compositional matrix adjust.
 Identities = 21/66 (32%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -1

Query  42        GPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLI  101
                 GPLL     +   +R V  E    +     + R+EG+NYLPQP+    AS L +F  +  
Sbjct  11404986  GPLLHSLYWIHMFFRLVSPELNTFLQVGSHESRVEGDNYLPQPVGH--ASSLYIFDFLSC  11404813

Query  102       GLIIVG  107
                   I++ 
Sbjct  11404812  KCILLA  11404795


>NOIK01000120.1 Anas zonorhyncha breed spot-billed scaffold122, whole genome 
shotgun sequence
Length=2440347

 Score = 33.1 bits (74),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 24/69 (35%), Positives = 38/69 (55%), Gaps = 13/69 (19%)
 Frame = -2

Query  88      HIASFLSV-FKL--VLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVF----FLS  140
               ++A+FL++ F +  V++GL  +G   F +F    PS+ Q G+      C+ VF    +L 
Sbjct  323663  NLAAFLTLRFSISSVVVGLRFIGAYYFIYF*KLLPSVSQGGK------CLYVFRKEEYLF  323502

Query  141     NMIENQCMS  149
               NM   QCMS
Sbjct  323501  NMFATQCMS  323475



Lambda      K        H        a         alpha
   0.325    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 34763354720


  Database: genome.fa
    Posted date:  Oct 23, 2017  5:50 PM
  Number of letters in database: 1,310,797,575
  Number of sequences in database:  20,089



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40