TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           20,089 sequences; 1,310,797,575 total letters



Query= SPP00001058_2.0 # Protein # Selenoprotein S (SELENOS) # Chicken

Length=194
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

NOIK01000026.1  Anas zonorhyncha breed spot-billed scaffold27, wh...  54.3    2e-13


>NOIK01000026.1 Anas zonorhyncha breed spot-billed scaffold27, whole genome shotgun 
sequence
Length=5302363

 Score = 54.3 bits (129),  Expect(2) = 2e-13, Method: Compositional matrix adjust.
 Identities = 26/28 (93%), Positives = 27/28 (96%), Gaps = 0/28 (0%)
 Frame = -2

Query  140      QQEAESGASTSSAVPKSKPNKKPLRGGG  167
                QQE ESGASTS+AVPKSKPNKKPLRGGG
Sbjct  4264476  QQEVESGASTSAAVPKSKPNKKPLRGGG  4264393


 Score = 43.1 bits (100),  Expect(2) = 2e-13, Method: Compositional matrix adjust.
 Identities = 20/21 (95%), Positives = 20/21 (95%), Gaps = 0/21 (0%)
 Frame = -1

Query  120      IEMWESMQEGKSYKGNLKLSQ  140
                I MWESMQEGKSYKGNLKLSQ
Sbjct  4264639  IAMWESMQEGKSYKGNLKLSQ  4264577


 Score = 60.8 bits (146),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 37/54 (69%), Gaps = 0/54 (0%)
 Frame = -1

Query  20       REGLELLQHTVGALLSSYGWYILLACVAIYLIVQKISPYLRMRPSSQQGATGAA  73
                R  L L+   VG+LLS+YGWYILL CV IY+IVQKIS  L  R S + GA  AA
Sbjct  4266523  RPNLRLVPLAVGSLLSNYGWYILLGCVVIYVIVQKISQSLAARQSGRAGAVDAA  4266362


 Score = 53.5 bits (127),  Expect = 8e-07, Method: Composition-based stats.
 Identities = 24/28 (86%), Positives = 27/28 (96%), Gaps = 0/28 (0%)
 Frame = -1

Query  74       VEPDMVVRRQEALLASRLRMQEELNAQA  101
                +EPD+VVRRQEAL A+RLRMQEELNAQA
Sbjct  4265251  LEPDLVVRRQEALAAARLRMQEELNAQA  4265168


 Score = 36.2 bits (82),  Expect = 0.39, Method: Compositional matrix adjust.
 Identities = 15/15 (100%), Positives = 15/15 (100%), Gaps = 0/15 (0%)
 Frame = -1

Query  167      GYNPLSGEGGGTCSW  181
                GYNPLSGEGGGTCSW
Sbjct  4262437  GYNPLSGEGGGTCSW  4262393



Lambda      K        H        a         alpha
   0.312    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 32590645050


  Database: genome.fa
    Posted date:  Oct 23, 2017  5:50 PM
  Number of letters in database: 1,310,797,575
  Number of sequences in database:  20,089



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40