_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

Blastx evalue: 2e-20
Query name: gi|67191194|ref|NP_001019905.1| selenoprotein S [Gallus gallus]
Query range: 8-194  (total 194)

Target: /data/www-rg/seblastian_results/657998161/tempfiles/temptarget.fasta
Chromosome: NOIK01000026.1:subseq_4214393,100083_ Strand: -
Positions:
-Exon 1  52874        52903
-Exon 2  51962        52136
-Exon 3  50748        50854
-Exon 4  50184        50273
-Exon 5  50002        50080
-Exon 6  47961        48043

Redox box: no

Query   GAGPGPGKPA <---Intron---> LEREGLELLQHTVGALLSSYGWYILLACVAIYLIVQKISPYLRMRPSSQQGATGAA-VE <---Intron--->
       |||||||    <   737bp    >   |  | |/   ||/|||/||||||| || ||/||||||  |  | | / ||  || /| <   1107bp   >
Target  GAGPGPGGAQ                AARPNLRLVPLAVGSLLSNYGWYILLGCVVIYVIVQKISQSLAARQSGRAGAVDAADIE               
       gggcgcgggc                ggccacccgccgggtcctatgttaccgtggatgagcaatcacggacagcggggggggag               
       gcgcgcggca                ccgcatgttctctgcttcaaggatttggtttatttaatcagtccgagggcgctaccat                
       aggggccttg                acctcacccccagcgggccccgcctgccgcctcccggacacgccggccggagttaatc                
                                                                                                           

Query    PDMVVRRQEALLASRLRMQEELNAQAERYKEKQRQ <---Intron---> LEEQKRRQKIEMWESMQEGKSYKGNLKLSQ <---Intron---> QE
        ||/|||||||| |/||||||||||||||||||||| <   474bp    > |||/|||||| ||||||||||||||||||| <   103bp    > ||
Target   PDLVVRRQEALAAARLRMQEELNAQAERYKEKQRQ                LEEEKRRQKIAMWESMQEGKSYKGNLKLSQ                QE
        cgcggaacggtgggccaacggcagcggatagacac                cgggacacaagatgaacggaatagacacac                cg
       acatttggaactcccgtgtaaatacacagaaaaaga                taaaaggaatctgagtaagagaagatatga                aa
       gccggagggatgaatccggagggtaaaaacaagaag                taaggagggaaggacgaaaatcaacgagtg                aa
                                                                                                           

Query   AESGASTSSAVPKSKPNKKPLRGGG <---Intron---> YNPLSGEGGGTCSWRPGRRGPSAGGUG
        |||||||/|||||||||||||||| <   1958bp   > |||||||||||||||||||||||||||
Target  VESGASTSAAVPKSKPNKKPLRGGG                YNPLSGEGGGTCSWRPGRRGPSAGGUG
       ggtggtatgggcatacaaactcggg                tacctgggggatttacgcagctgggtg
       tacgcccccctcacacaaactggg                gaactcgagggcgcggcggggcccgggg
       aattcccaaacgataacagtgaat                ctccgtaaaaagtcgaaccgcgaataac
                                                                         * 
Sequence until next stop: 
TAA
* 

Distance CDS-SECIS: 558 ; UGA-SECIS: 561