TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           20,089 sequences; 1,310,797,575 total letters



Query= SPP00001055_2.0 # Protein # Selenoprotein P (SELENOP) # Chicken

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

NOIK01000001.1  Anas zonorhyncha breed spot-billed scaffold1, who...    140   5e-35
NOIK01000317.1  Anas zonorhyncha breed spot-billed scaffold319, w...    104   5e-32
NOIK01000114.1  Anas zonorhyncha breed spot-billed scaffold116, w...  35.0    1.9  


>NOIK01000001.1 Anas zonorhyncha breed spot-billed scaffold1, whole genome shotgun 
sequence
Length=25320044

 Score =   140 bits (353),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 66/75 (88%), Positives = 72/75 (96%), Gaps = 0/75 (0%)
 Frame = -2

Query  62        ASRLEDLRVKLENEGLVNISYVVVNHQSPHSQKKFHLLQESVSDHITVYQQDDHQADVWT  121
                 +SRLEDLRVKLENEGLVNISYVVVNHQ  +SQKKFHLL+ESVS++ITVYQQD+HQADVWT
Sbjct  12461329  SSRLEDLRVKLENEGLVNISYVVVNHQGAYSQKKFHLLKESVSEYITVYQQDEHQADVWT  12461150

Query  122       TLNGNKDDFLIYDRC  136
                 TLNGNKDDFLIYDR 
Sbjct  12461149  TLNGNKDDFLIYDRS  12461105


 Score = 85.9 bits (211),  Expect = 6e-17, Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 45/56 (80%), Gaps = 2/56 (4%)
 Frame = -2

Query  135       RCGRLVYHLGLPYSFLSFQYVEEAIKIAYCENNCGNCSYTEPDIDNICENITKKED  190
                 RCGRLVYHLGLPYSFLSF YVEEAIKIAYCEN CGNCSYT     ++  +I +KE 
Sbjct  12459337  RCGRLVYHLGLPYSFLSFNYVEEAIKIAYCENKCGNCSYTV--FSSLILHILRKET  12459176


 Score = 84.0 bits (206),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 55/64 (86%), Positives = 59/64 (92%), Gaps = 0/64 (0%)
 Frame = -3

Query  1         MWAglglalvlcllpgggTESQRCQEPPEWHIGEESPMLNARGSVAVVALLQASUYLCLL  60
                 MWAGLGL LVLCLLPGGGTE+Q CQEPPEW +GEE+PMLN+RGSV VVALLQAS YLCLL
Sbjct  12463359  MWAGLGLVLVLCLLPGGGTETQNCQEPPEWRVGEENPMLNSRGSVTVVALLQAS*YLCLL  12463180

Query  61        QASR  64
                 QASR
Sbjct  12463179  QASR  12463168


 Score = 40.4 bits (93),  Expect = 0.038, Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 42/67 (63%), Gaps = 5/67 (7%)
 Frame = -3

Query  175       EPDIDNICENITKKEDENLAGIepepepsgqhshhhhqlhrhrhhhhhreggrhsKTQNH  234
                 EPDID  CENITKK DE LA +EP+P     + +H    HRH HHHH        K QNH
Sbjct  12457395  EPDIDATCENITKKADEKLAEVEPKPSGQHSNHNHQPHRHRHHHHHHRHS-----KNQNH  12457231

Query  235       QAPSESQ  241
                 QAPSE+Q
Sbjct  12457230  QAPSETQ  12457210


>NOIK01000317.1 Anas zonorhyncha breed spot-billed scaffold319, whole genome 
shotgun sequence
Length=965818

 Score =   104 bits (260),  Expect(2) = 5e-32, Method: Compositional matrix adjust.
 Identities = 56/149 (38%), Positives = 73/149 (49%), Gaps = 32/149 (21%)
 Frame = +2

Query  21      SQRCQEPPEWHIGEESPMLNARGSVAVVALLQASUYLCLLQASR----------------  64
               S+ CQE P W I   SPM  A G V VVALL+AS + CL QA R                
Sbjct  357185  SRLCQEAPAWQINGSSPMAEAAGQVTVVALLKAS*HFCLRQAHR*GLPPPPPPXXXGGGG  357364

Query  65      ----------------LEDLRVKLENEGLVNISYVVVNHQSPHSQKKFHLLQESVSDHIT  108
                               L  LR +L  +G+ ++ Y++VN Q+P S+  F  LQ      + 
Sbjct  357365  GVAAVAASPQLLLPRSLGGLRQRLSRQGMADVRYMIVNEQAPLSRAMFGELQRQAPPGVP  357544

Query  109     VYQQDDHQADVWTTLNGNKDDFLIYDRCG  137
               V+QQ   + DVW  L G+KDDFL+YDR G
Sbjct  357545  VFQQQPQEPDVWQLLGGDKDDFLVYDR*G  357631


 Score = 56.2 bits (134),  Expect(2) = 5e-32, Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 28/37 (76%), Gaps = 0/37 (0%)
 Frame = +1

Query  136     CGRLVYHLGLPYSFLSFQYVEEAIKIAYCENNCGNCS  172
               CGRL +H+ LPYSFL F YVE AI+  + ++ CGNCS
Sbjct  357742  CGRLAFHIQLPYSFLHFPYVESAIRFTHSKDFCGNCS  357852


>NOIK01000114.1 Anas zonorhyncha breed spot-billed scaffold116, whole genome 
shotgun sequence
Length=2528456

 Score = 35.0 bits (79),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 33/79 (42%), Gaps = 16/79 (20%)
 Frame = -1

Query  19       TESQRCQEPPEWHIGEESPMLNARGSVAVVALLQASUYLCLLQASRLEDLRVKLENEGLV  78
                TES+R      WH G  +P   A  S+++ A LQ    +C            +L  + ++
Sbjct  1813100  TESRR-----RWHAGWRAPTAGASDSMSLTAALQQREGIC-----------TRLAGQAVL  1812969

Query  79       NISYVVVNHQSPHSQKKFH  97
                    VVV   S H Q K H
Sbjct  1812968  RAKTVVVQQHSKHFQLKLH  1812912



Lambda      K        H        a         alpha
   0.317    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 54742158828


  Database: genome.fa
    Posted date:  Oct 23, 2017  5:50 PM
  Number of letters in database: 1,310,797,575
  Number of sequences in database:  20,089



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40