TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 20,089 sequences; 1,310,797,575 total letters Query= SPP00001052_2.0 # Protein # Selenoprotein O (SELENOO) # Chicken Length=472 Score E Sequences producing significant alignments: (Bits) Value NOIK01000145.1 Anas zonorhyncha breed spot-billed scaffold147, w... 147 2e-35 NOIK01000282.1 Anas zonorhyncha breed spot-billed scaffold284, w... 51.2 5e-05 >NOIK01000145.1 Anas zonorhyncha breed spot-billed scaffold147, whole genome shotgun sequence Length=2077029 Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/100 (93%), Positives = 98/100 (98%), Gaps = 0/100 (0%) Frame = +1 Query 147 FGFMDRYDPEHICNGSDNTGRYAYNKQPEICKWNLGKlaealvpelpleiselileeeYD 206 + F+ RYDP+HICNGSDNTGRYAYNKQPEICKWNLGKLAEALVPELPLEISELILEEEYD Sbjct 1919038 YFFVCRYDPDHICNGSDNTGRYAYNKQPEICKWNLGKLAEALVPELPLEISELILEEEYD 1919217 Query 207 AEFEKHYLQKMRKKLGLIQLELEEDSKLVSELLETMHLTG 246 AEFEKHYLQKMRKKLGLI+LELEED+KLVSELLETMHLTG Sbjct 1919218 AEFEKHYLQKMRKKLGLIRLELEEDNKLVSELLETMHLTG 1919337 Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 59/66 (89%), Positives = 63/66 (95%), Gaps = 0/66 (0%) Frame = +3 Query 46 FIRFGSFEIFKPPDEYTGRKGPSVNRNDIRIQMLDYVIGTFYPEIQEAHADNSIQRNAAF 105 F RFGSFEIFKP DEYTGRKGPSVNRNDIRIQMLDYVIGTFYPEIQEA++DN+IQRNAAF Sbjct 1915086 FNRFGSFEIFKPTDEYTGRKGPSVNRNDIRIQMLDYVIGTFYPEIQEAYSDNNIQRNAAF 1915265 Query 106 FKEITK 111 FKE+ K Sbjct 1915266 FKEVRK 1915283 Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 60/64 (94%), Positives = 64/64 (100%), Gaps = 0/64 (0%) Frame = +3 Query 295 PRQLSMMLMLAQSNPQLFALIGTKANINKELERIEQFSKLQQLTAADLLSRNKRHWTEWL 354 PRQLSMMLMLAQSNPQLFALIGTKANINKELERIEQF+KL+QLTAADLLSRNK+HWTEWL Sbjct 1921383 PRQLSMMLMLAQSNPQLFALIGTKANINKELERIEQFTKLEQLTAADLLSRNKKHWTEWL 1921562 Query 355 EKYR 358 EKY+ Sbjct 1921563 EKYK 1921574 Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 51/60 (85%), Positives = 55/60 (92%), Gaps = 0/60 (0%) Frame = +2 Query 353 WLEKYRVRLHKEVESISDVDAWNTERVKVMNSNNPKYILRNYIAQNAIEAAENGDFSEVR 412 +L +RVRL KE+E ISD DAWNT+RVKVMNSNNPKYILRNYIAQNAIEAAENGDFSEVR Sbjct 1922651 YLFNFRVRLQKEIEGISDADAWNTDRVKVMNSNNPKYILRNYIAQNAIEAAENGDFSEVR 1922830 Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 46/55 (84%), Positives = 49/55 (89%), Gaps = 0/55 (0%) Frame = +3 Query 98 SIQRNAAFFKEITKRTARLVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFMDR 152 +++ FF ITKRTARLVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFMDR Sbjct 1918545 CVEKCKCFFF*ITKRTARLVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFMDR 1918709 Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 46/48 (96%), Positives = 48/48 (100%), Gaps = 0/48 (0%) Frame = +1 Query 1 MFHLGIPTTRAGTCVTSDSEVVRDIFYDGNPKKERCTVVLRIASTFIR 48 MFHLGIPTTRAGTCVTSDSEVVRDIFYDGNPKKE+CTVVLRIASTF+R Sbjct 1909543 MFHLGIPTTRAGTCVTSDSEVVRDIFYDGNPKKEKCTVVLRIASTFLR 1909686 Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 46/48 (96%), Positives = 48/48 (100%), Gaps = 0/48 (0%) Frame = +3 Query 1 MFHLGIPTTRAGTCVTSDSEVVRDIFYDGNPKKERCTVVLRIASTFIR 48 MFHLGIPTTRAGTCVTSDSEVVRDIFYDGNPKKE+CTVVLRIASTF+R Sbjct 1914000 MFHLGIPTTRAGTCVTSDSEVVRDIFYDGNPKKEKCTVVLRIASTFLR 1914143 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 47/53 (89%), Positives = 50/53 (94%), Gaps = 0/53 (0%) Frame = +1 Query 244 LTGGDFTNIFYLLSSFSVDTDPSRLEDFLEKLISQCASVEELRVAFKPQMDPR 296 L+GGDFTNIFYLLSSFSVD DPSRLEDFLEKL QCAS+EEL+VAFKPQMDPR Sbjct 1919677 LSGGDFTNIFYLLSSFSVDFDPSRLEDFLEKLARQCASMEELKVAFKPQMDPR 1919835 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/64 (86%), Positives = 58/64 (91%), Gaps = 2/64 (3%) Frame = +2 Query 411 VRNVLKLLENPFQetedsteme--tkeeeatataaacaqatRSRLSYCSKPPLWASELCV 468 VRNVLKLLENPFQETE STE++ T+EEEATA AAACAQATRSRL YCSKPPLWASELCV Sbjct 1923458 VRNVLKLLENPFQETESSTEVKGDTEEEEATAAAAACAQATRSRLPYCSKPPLWASELCV 1923637 Query 469 TUSS 472 T SS Sbjct 1923638 T*SS 1923649 >NOIK01000282.1 Anas zonorhyncha breed spot-billed scaffold284, whole genome shotgun sequence Length=1108967 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 21/29 (72%), Positives = 24/29 (83%), Gaps = 0/29 (0%) Frame = -2 Query 128 GVLNTDNMSIVGLTIDYGPFGFMDRYDPE 156 GV NTDN S++ +TIDYGPFGFMD YDP Sbjct 61429 GVCNTDNFSLLSITIDYGPFGFMDSYDPS 61343 Score = 38.9 bits (89), Expect = 0.29, Method: Compositional matrix adjust. Identities = 15/35 (43%), Positives = 29/35 (83%), Gaps = 0/35 (0%) Frame = -1 Query 381 VMNSNNPKYILRNYIAQNAIEAAENGDFSEVRNVL 415 ++++ NP+Y+LRN++A++A++ A DFSEV+ V+ Sbjct 49958 LLSAVNPRYVLRNWMAESAVQKANLNDFSEVKLVI 49854 Lambda K H a alpha 0.320 0.135 0.404 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 148537766610 Database: genome.fa Posted date: Oct 23, 2017 5:50 PM Number of letters in database: 1,310,797,575 Number of sequences in database: 20,089 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40