_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 2e-39 Query name: gi|874477447|ref|XP_005020906.2| PREDICTED: LOW QUALITY PROTEIN: selenoprotein O [Anas platyrhynchos] Query range: 1-598 (total 598) Target: /data/www-rg/seblastian_results/757437910/tempfiles/temptarget.fasta Chromosome: your_sequence Strand: + Positions: -Exon 1 53995 54144 -Exon 2 54698 54849 -Exon 3 55747 55950 -Exon 4 56902 57082 -Exon 5 60386 60516 -Exon 6 60863 61143 -Exon 7 61492 61642 -Exon 8 63196 63381 -Exon 9 64476 64632 -Exon 10 65266 65457 Redox box: YES Query MRPTPQLKNACFLKNVCSLKTESSEKAFVFPRTGILFDRLLQQYEPRATQ <---Intron---> PAAHCYCGHQFGSFAGQLGDGAAMYLGEVLGPRG |||||||||||||||||||||||||||||||||||||||||||||||| | < 553bp > |||||||||||||||||||||||||||||||||| Target MRPTPQLKNACFLKNVCSLKTESSEKAFVFPRTGILFDRLLQQYEPRAPQ PAAHCYCGHQFGSFAGQLGDGAAMYLGEVLGPRG accacctaagttcaagttcaagttgagtgtcaagattgcctcctgccgcc cggctttgcctgatggccgggggatcgggcgccg tgcccataacgttaatgctacaccaactttcgcgtttagttaaaacgcca cccagaggaatggtcgatgagcctatgattgcgg gtaggaagccctagtcccaatgttaactctaatttgtcatagacagcctg gcaccccccgcccccgggcccccgcgcgggcggc Query XXXGRWEXQLKGAGLTPFSR <---Intron---> QADGRKVLRSSIREFLCSEAMFHLGIPTTRAGTCVTSDSEVVRDIFYDGNPKKEKCTVVLRIAS |||| |||||||||||| < 897bp > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Target ---GRWEMQLKGAGLTPFSR QADGRKVLRSSIREFLCSEAMFHLGIPTTRAGTCVTSDSEVVRDIFYDGNPKKEKCTVVLRIAS ---gctgaccagggcacttc cgggcagcataacgtctaggatccgacaaaggatgatgtgggcgattggacaagataggcaagt ---gggatatagcgtcctcg acaggattgcgtgattggacttatgtcccgcgcgtccacattgattaagacaaaagctttgtcc ---ccggggggcccccccc gactttacggacaagcgttgcgtcaaagaggtaccgatcgatttcatttataaaagtattgaatt Query TFLR <---Intron---> FGSFEIFKPTDEYTGRKGPSVNRNDIRIQMLDYVIGTFYPEIQEAYSDNNIQRNAAFFKE <---Intron---> ITKR |||| < 951bp > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| < 3303bp > |||| Target TFLR FGSFEIFKPTDEYTGRKGPSVNRNDIRIQMLDYVIGTFYPEIQEAYSDNNIQRNAAFFKE ITKR atca tgttgatacaggtagcagcagaaagacacacgtgagattcgacggttgaaacaaggttag aaac cttg tgctattaccaaacggagcgtagaatgtattaattgctacataacacaaatagaccttaa tcag aca attttattatttataacgttcccatttaaagtttgtctctaacggttaccttggtttccag agag Query TARLVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFMDR <---Intron---> YDPDHICNGSDNTGRYAYNKQPEICKWNLGKLAEALVPELPLEI |||||||||||||||||||||||||||||||||||||||| < 346bp > |||||||||||||||||||||||||||||||||||||||||||| Target TARLVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFMDR YDPDHICNGSDNTGRYAYNKQPEICKWNLGKLAEALVPELPLEI agacgggtctggttcggcaagaaaaggcaagtgctgtaga tgcgcatagtgaagctgtaaccgatatacgacgggtgcgcccga ccgttcagagtgtgagttacaatgttgtctaagctgttag aacaatgagcaacggacaaaacatgagatgatcacttcatctat aaagttgggttctctcggtattgcataattctcttgtgc atcccctctttttaacttccggagtcggtaggctacataggcgac Query SELILEEEYDAEFEKHYLQKMRKKLGLIRLELEEDNKLVSELLETMHLTG <---Intron---> GDFTNIFYLLSSFSVDFDPSRLEDFLEKLASQCA |||||||||||||||||||||||||||||||||||||||||||||||||| < 348bp > |||||||||||||||||||||||||||||| ||| Target SELILEEEYDAEFEKHYLQKMRKKLGLIRLELEEDNKLVSELLETMHLTG GDFTNIFYLLSSFSVDFDPSRLEDFLEKLARQCA agcacgggtgggtgacttcaaaaacgcactgtgggaacgtgccgaaccag ggtaaatttcatttggtgctacggttgacgactg gatttaaaaacataaaataatgaatgttgtataaaaattcattactatc ggatcattattgctctataccgtaattaatcgagc caccgagactgataattggggggaacctggaaaattgggtatcacgtca caccattccggtacaattttaagatcaagtaagtt Query SMEELKVAFKPQMDPR <---Intron---> QLSMMLMLAQSNPQLFALIGTKANINKELERIEQFTKLEQLTAADLLSRNKKHWTEWLEKYK <---I |||||||||||||||| < 1553bp > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| < 1 Target SMEELKVAFKPQMDPR QLSMMLMLAQSNPQLFALIGTKANINKELERIEQFTKLEQLTAADLLSRNKKHWTEWLEKYK taggcaggtaccagca cctaacatgctaccctgcagaagaaaagtgcagctaacgctagggtcaaaaactagtcgata ctaatatctacatacg atctttttcacacattcttgcacataaatagtaatcataatcccattggaaaagcagtaaaa tgaagattcgtggta aagagggggtgtttggtaataaattataaagctaactagggaaattaccataacgaaggaac Query ntron---> VRLQKEIEGISDADAWNTDRVKVMNSNNPKYILRNYIAQNAIEAAENGDFSE <---Intron---> VRNVLKLLENPFQETESSTEVK 094bp > |||||||||||||||||||||||||||||||||||||||||||||||||||| < 633bp > |||||||||||||||||||||| Target VRLQKEIEGISDADAWNTDRVKVMNSNNPKYILRNYIAQNAIEAAENGDFSE VRNVLKLLENPFQETESSTEVK gctcagaggaaggggtaagcgagaataacatataatagcagaggggaggttg gaagtaccgactcgagatagga tgtaaatagtgacacgacagtattacaacaattgaatcaactaccaagatca tgattattaactaacagccata actaaaaaactttttcgttttggtgtcctaatcgatttcgtcaaatatgtcag aatagacggtacaagatcaggg Query GDTEEEEATAAAAACAQATRSRLPYCSKPPLWASELCVTUSS |||||||||||||||||||||||||||||||||||||||||| Target GDTEEEEATAAAAACAQATRSRLPYCSKPPLWASELCVTUSS ggagggggagggggtgcgaaaaccttaaccctgtgctgattt gacaaaacccccccgcaccgggtcaggacctgccatgtcgcc acaaggaagtaattttaacacagatctataggtcgcttaata * Sequence until next stop: TAA * Distance CDS-SECIS: 313 ; UGA-SECIS: 319