TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 20,089 sequences; 1,310,797,575 total letters Query= SPP00001049_2.0 # Protein # Selenoprotein N (SELENON) # Chicken Length=530 Score E Sequences producing significant alignments: (Bits) Value NOIK01000279.1 Anas zonorhyncha breed spot-billed scaffold281, w... 142 1e-33 NOIK01000054.1 Anas zonorhyncha breed spot-billed scaffold56, wh... 34.7 7.5 >NOIK01000279.1 Anas zonorhyncha breed spot-billed scaffold281, whole genome shotgun sequence Length=1115761 Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 65/72 (90%), Positives = 69/72 (96%), Gaps = 0/72 (0%) Frame = -3 Query 119 ISHVALSGLRNWTAPVSPKSVMLARQFKAFLPPKNKLDLGDPWWIIPSELNIFTGYLSNN 178 ISHVALSGLRNWTAP + KSVMLA+ FKAFLPPKNK+DLGDPWWIIPSELNIFTGYLSNN Sbjct 21842 ISHVALSGLRNWTAPAAHKSVMLAKHFKAFLPPKNKVDLGDPWWIIPSELNIFTGYLSNN 21663 Query 179 RFYPPPPKGKEI 190 RFYPPPPKGKE+ Sbjct 21662 RFYPPPPKGKEV 21627 Score = 139 bits (351), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 71/81 (88%), Positives = 73/81 (90%), Gaps = 3/81 (4%) Frame = -1 Query 288 GASEGSNMEVDIGYLPQMELESTGPSVPSVIYDENGNVIDSRDPSGEPIQFVFEEITWQQ 347 G S SN E+ +L QMELESTGPSVPSVIYDENGNVIDSRDPSGEPIQFVFEEITWQQ Sbjct 17959 GISTVSNSEL---FLLQMELESTGPSVPSVIYDENGNVIDSRDPSGEPIQFVFEEITWQQ 17789 Query 348 EIPWEEAAQKLEVAMYPFKKV 368 EIPWEEAAQKLEVAMYPFKKV Sbjct 17788 EIPWEEAAQKLEVAMYPFKKV 17726 Score = 114 bits (285), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 55/65 (85%), Positives = 59/65 (91%), Gaps = 2/65 (3%) Frame = -1 Query 465 MIICLPNGTVIHHINANYFLDITSMKPEDVESSIFSFSANFDDPSTATYLQFLKEGLQRA 524 ++IC + IHHINANYFLDITSMKPEDVESSIFSFS NFDDPSTATYLQFLKEGLQRA Sbjct 13459 LLICFLSQ--IHHINANYFLDITSMKPEDVESSIFSFSNNFDDPSTATYLQFLKEGLQRA 13286 Query 525 KAYLQ 529 K+YLQ Sbjct 13285 KSYLQ 13271 Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 45/48 (94%), Positives = 47/48 (98%), Gaps = 0/48 (0%) Frame = -2 Query 230 FRIHAEFQLNEPPDFPFWFSPGQFTGYIVLSKDSSHVREFKLFVPNKR 277 FRIHAEFQLNEPPDFPFWFSPGQFTG+I+LSKDSSHVREFKLFVPN R Sbjct 19815 FRIHAEFQLNEPPDFPFWFSPGQFTGHIILSKDSSHVREFKLFVPNNR 19672 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 39/42 (93%), Positives = 40/42 (95%), Gaps = 0/42 (0%) Frame = -2 Query 190 IIIHRLLSMFHPRPFVKTRFAPQGSVACIQAISTYYYTIAFR 231 I IHRLLSMFHPRPFVKTRFAPQGSVACIQAIST+YY IAFR Sbjct 20742 ITIHRLLSMFHPRPFVKTRFAPQGSVACIQAISTFYYAIAFR 20617 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 39/45 (87%), Positives = 42/45 (93%), Gaps = 1/45 (2%) Frame = -2 Query 76 GVTPVSDFEED-APDPNGETLSIVAKFQPLVMETMTKSKDGFLGI 119 GVTPVS+FEE+ PDP GETLSIVAKFQPLVMETMTKSKDGFLG+ Sbjct 22446 GVTPVSEFEEEETPDPTGETLSIVAKFQPLVMETMTKSKDGFLGV 22312 Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 39/52 (75%), Positives = 42/52 (81%), Gaps = 2/52 (4%) Frame = -2 Query 426 FISSWSLVKELE--ELQTNRENEFYSKLADLHLEKYNFPVEMIICLPNGTVI 475 F S W + + LQTNRENEFYSKLADLHLEKYNFPVEMIICLPNGTV+ Sbjct 14781 FCSFWCM*EYFSGFSLQTNRENEFYSKLADLHLEKYNFPVEMIICLPNGTVV 14626 Score = 76.6 bits (187), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 38/40 (95%), Positives = 39/40 (98%), Gaps = 0/40 (0%) Frame = -3 Query 403 GSGRTLRETVLESSPILALLNESFISSWSLVKELEELQTN 442 GSGRTLRETVLESSPILALLNESFISSWSLVKELEELQ + Sbjct 15518 GSGRTLRETVLESSPILALLNESFISSWSLVKELEELQVS 15399 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/50 (74%), Positives = 40/50 (80%), Gaps = 4/50 (8%) Frame = -1 Query 357 KLEVAMYPFKKVSYLPFTEAFERAKAEKKLVHSILLWGALDDQSCUGSGR 406 KL V + +VSY PFT+AFERAKAEKKLVHSILLWGALDDQSC G G Sbjct 16474 KLSVCL----QVSYFPFTQAFERAKAEKKLVHSILLWGALDDQSC*GEGH 16337 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/29 (93%), Positives = 28/29 (97%), Gaps = 0/29 (0%) Frame = -2 Query 277 RSLNVDMEWLYGASEGSNMEVDIGYLPQM 305 RSLNVDMEWLYGASE SNMEVDIGYLPQ+ Sbjct 18954 RSLNVDMEWLYGASESSNMEVDIGYLPQV 18868 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/40 (100%), Positives = 40/40 (100%), Gaps = 0/40 (0%) Frame = -3 Query 37 ELALKslgseglflfsslDTNNDLYLSPEEFKPIAEKLTG 76 ELALKSLGSEGLFLFSSLDTNNDLYLSPEEFKPIAEKLTG Sbjct 23366 ELALKSLGSEGLFLFSSLDTNNDLYLSPEEFKPIAEKLTG 23247 >NOIK01000054.1 Anas zonorhyncha breed spot-billed scaffold56, whole genome shotgun sequence Length=3961361 Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust. Identities = 17/39 (44%), Positives = 22/39 (56%), Gaps = 0/39 (0%) Frame = +3 Query 265 HVREFKLFVPNKRSLNVDMEWLYGASEGSNMEVDIGYLP 303 +RE LF KR L D+ LYG +GS EV++ Y P Sbjct 3204357 QLRELGLFSLEKRRLRGDLIALYGYHKGSCSEVELVYFP 3204473 Lambda K H a alpha 0.318 0.135 0.405 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 173286045534 Database: genome.fa Posted date: Oct 23, 2017 5:50 PM Number of letters in database: 1,310,797,575 Number of sequences in database: 20,089 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40