TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           20,089 sequences; 1,310,797,575 total letters



Query= SPP00001044_2.0 # Protein # Selenoprotein K (SELENOK) # Chicken

Length=95
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

NOIK01000016.1  Anas zonorhyncha breed spot-billed scaffold16, wh...  61.6    4e-10


>NOIK01000016.1 Anas zonorhyncha breed spot-billed scaffold16, whole genome shotgun 
sequence
Length=6513609

 Score = 61.6 bits (148),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 28/37 (76%), Positives = 32/37 (86%), Gaps = 0/37 (0%)
 Frame = +2

Query  1        MVYISNGQVLDNRSRAPWSLSAITDFFWSIADFVVMF  37
                M  +  GQVLDN+SRAPWSLS+ITDFFWSIADFVV+ 
Sbjct  2450921  MFVVMTGQVLDNQSRAPWSLSSITDFFWSIADFVVLL  2451031


 Score = 39.3 bits (90),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 20/27 (74%), Positives = 22/27 (81%), Gaps = 1/27 (4%)
 Frame = +1

Query  35       VMFFQSIIQPDLRRRGYTSSSYLGQSD  61
                +  FQSIIQPDLRRRG T SSYLG +D
Sbjct  2451763  IFSFQSIIQPDLRRRGNT-SSYLGHND  2451840



Lambda      K        H        a         alpha
   0.326    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 10888157375


  Database: genome.fa
    Posted date:  Oct 23, 2017  5:50 PM
  Number of letters in database: 1,310,797,575
  Number of sequences in database:  20,089



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40