TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           20,089 sequences; 1,310,797,575 total letters



Query= SPP00001043_2.0 # Protein # 15 kDa selenoprotein (Sel15) # Chicken

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

NOIK01000131.1  Anas zonorhyncha breed spot-billed scaffold133, w...  88.6    9e-19
NOIK01000027.1  Anas zonorhyncha breed spot-billed scaffold28, wh...  32.7    2.3  


>NOIK01000131.1 Anas zonorhyncha breed spot-billed scaffold133, whole genome 
shotgun sequence
Length=2205192

 Score = 88.6 bits (218),  Expect = 9e-19, Method: Compositional matrix adjust.
 Identities = 43/45 (96%), Positives = 45/45 (100%), Gaps = 0/45 (0%)
 Frame = -1

Query  93      IKYVRGSDPVLKLLDDSGNIAEELSILKWNTDSVEEFLSEKLERL  137
               ++YVRGSDPVLKLLDDSGNIAEELSILKWNTDSVEEFLSEKLERL
Sbjct  872871  LQYVRGSDPVLKLLDDSGNIAEELSILKWNTDSVEEFLSEKLERL  872737


 Score = 84.3 bits (207),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 53/57 (93%), Positives = 56/57 (98%), Gaps = 0/57 (0%)
 Frame = -1

Query  1       INVYGAQLSSEACRELGFssnllcsscnllGQFSLNQLDPFCRQCCQEEAQLETRKL  57
               + VYGAQLSSEACRELGFSSNLLCSSCNLLGQF+LNQLDPFCRQCCQEEAQLETRK+
Sbjct  891360  VYVYGAQLSSEACRELGFSSNLLCSSCNLLGQFNLNQLDPFCRQCCQEEAQLETRKV  891190


 Score = 44.3 bits (103),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -3

Query  38      LDPFCRQCCQEEAQLETRKLYAGAVLEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIK  94
               L P  ++       L    L+AG  + +       FPQ  AFVRSDKPKLFRGLQIK
Sbjct  874780  LKPHSKRNN*GNTSLNINLLHAGGKVLIL---FISFPQTLAFVRSDKPKLFRGLQIK  874619


 Score = 42.7 bits (99),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 20/23 (87%), Positives = 21/23 (91%), Gaps = 0/23 (0%)
 Frame = -3

Query  56      KLYAGAVLEVCGUKLGRFPQVQA  78
               +LYAGAVLEVCG KLGRFPQVQ 
Sbjct  882073  QLYAGAVLEVCG*KLGRFPQVQG  882005


>NOIK01000027.1 Anas zonorhyncha breed spot-billed scaffold28, whole genome shotgun 
sequence
Length=5301505

 Score = 32.7 bits (73),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 21/64 (33%), Positives = 34/64 (53%), Gaps = 3/64 (5%)
 Frame = +1

Query  65       VCGUKLGRFPQVQAFVRS-DKPKLFRGLQIKYVRGSDPVLKLLDDSGNIAEELSILKWNT  123
                +CG +L    + Q F  + D+  ++ GLQ+ Y RGS   L+ +     I + L+ LKW T
Sbjct  2432731  LCGFQL--LKETQWFSSTVDEQSIYCGLQLLYQRGSCGGLEFITSPTGILDGLNNLKWPT  2432904

Query  124      DSVE  127
                 S +
Sbjct  2432905  GSCQ  2432916



Lambda      K        H        a         alpha
   0.320    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 11302268796


  Database: genome.fa
    Posted date:  Oct 23, 2017  5:50 PM
  Number of letters in database: 1,310,797,575
  Number of sequences in database:  20,089



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40