TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           20,089 sequences; 1,310,797,575 total letters



Query= SPP00001041_2.0 # Protein # Selenocysteine synthase (SecS) # Chicken

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

NOIK01020089.1  Anas zonorhyncha breed spot-billed scaffold53, wh...    177   6e-49
NOIK01000226.1  Anas zonorhyncha breed spot-billed scaffold228, w...  35.8    0.40 
NOIK01002142.1  Anas zonorhyncha breed spot-billed scaffold2154, ...  33.1    3.4  
NOIK01000197.1  Anas zonorhyncha breed spot-billed scaffold199, w...  32.0    8.0  
NOIK01000029.1  Anas zonorhyncha breed spot-billed scaffold30, wh...  32.0    8.3  


>NOIK01020089.1 Anas zonorhyncha breed spot-billed scaffold53, whole genome shotgun 
sequence
Length=6124769

 Score =   177 bits (449),  Expect = 6e-49, Method: Compositional matrix adjust.
 Identities = 93/123 (76%), Positives = 94/123 (76%), Gaps = 28/123 (23%)
 Frame = -3

Query  1        FRLIHGIGRSGDISAVQPKAAGSSLLNKLTNSVVLDIIKQ--------------------  40
                FRLIHGIGRSGDISAVQPKAAGSSLLNKLTNSVVLDIIK                     
Sbjct  1510752  FRLIHGIGRSGDISAVQPKAAGSSLLNKLTNSVVLDIIKLAGRCKSQNICVYISCVLRVN  1510573

Query  41       --------AGVRTVTNCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI  92
                        AGV+TVTNCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI
Sbjct  1510572  F*LLFFLCAGVQTVTNCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI  1510393

Query  93       TAG  95
                TAG
Sbjct  1510392  TAG  1510384


 Score = 75.5 bits (184),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 34/42 (81%), Positives = 36/42 (86%), Gaps = 0/42 (0%)
 Frame = -2

Query  89       KSMITAGRLEELAIICANYDIPHIVNNAYGVQSSKCMHLIQQ  130
                K      RLEELA+ICANYDIPHIVNNAYGVQSSKCMHLI+Q
Sbjct  1505353  KLQFYTHRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIKQ  1505228


 Score = 73.2 bits (178),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 34/41 (83%), Positives = 37/41 (90%), Gaps = 0/41 (0%)
 Frame = -3

Query  125      MHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFSESFI  165
                + L+ +GARVGRIDAFVQSLDKNFMVPVGGAIIAGF  SFI
Sbjct  1503741  LFLLTKGARVGRIDAFVQSLDKNFMVPVGGAIIAGFDASFI  1503619


>NOIK01000226.1 Anas zonorhyncha breed spot-billed scaffold228, whole genome 
shotgun sequence
Length=1429692

 Score = 35.8 bits (81),  Expect = 0.40, Method: Compositional matrix adjust.
 Identities = 33/98 (34%), Positives = 42/98 (43%), Gaps = 9/98 (9%)
 Frame = -2

Query  58      MSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGRLEELAIICANYD-IPHIVNNA  116
               + L LCFL     R +   I WPR+D  SC K    +  LE   + C   D IP +   A
Sbjct  207941  LRLPLCFLHCGPGRDRRLSISWPRVDVVSCAKQYFFSDSLE---MTCEP*DFIPMV--KA  207777

Query  117     YGVQSSKCMHLIQQ---GARVGRIDAFVQSLDKNFMVP  151
                GV     MH+I       R G   A  +SL  N + P
Sbjct  207776  PGVFRKPLMHVINSRILKWRQGMRKALTKSLVNNIV*P  207663


>NOIK01002142.1 Anas zonorhyncha breed spot-billed scaffold2154, whole genome 
shotgun sequence
Length=20977

 Score = 33.1 bits (74),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 18/65 (28%), Positives = 30/65 (46%), Gaps = 0/65 (0%)
 Frame = -2

Query  68     RHKRPKAKYIIWPRIDQKSCFKSMITAGRLEELAIICANYDIPHIVNNAYGVQSSKCMHL  127
              RH RP  + ++W RI  +    S I++      A +  + D PHI +N     +   + L
Sbjct  18654  RHLRPTLRLLVWRRIGVQMAVVSQISSDSGSPPAPLAPSADPPHIFHNFDTTFTRISVFL  18475

Query  128    IQQGA  132
              +  GA
Sbjct  18474  VGPGA  18460


>NOIK01000197.1 Anas zonorhyncha breed spot-billed scaffold199, whole genome 
shotgun sequence
Length=1583177

 Score = 32.0 bits (71),  Expect = 8.0, Method: Compositional matrix adjust.
 Identities = 16/62 (26%), Positives = 30/62 (48%), Gaps = 3/62 (5%)
 Frame = -1

Query  37       IIKQAGVRTVTNCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGR  96
                ++K +G  T+   ++ P        LCF T  H     K ++ PR+D  +C   +++A R
Sbjct  1276601  LVKSSGFSTMYQLYICPKYDN---GLCFFTSPHVAHFPKQMLNPRMD*SACHIHLLSAAR  1276431

Query  97       LE  98
                 +
Sbjct  1276430  TQ  1276425


>NOIK01000029.1 Anas zonorhyncha breed spot-billed scaffold30, whole genome shotgun 
sequence
Length=5048620

 Score = 32.0 bits (71),  Expect = 8.3, Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 0/53 (0%)
 Frame = -1

Query  29      LTNSVVLDIIKQAGVRTVTNCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPR  81
               L  ++  ++I   G+  + +CF     +G    +CFL + H   K K +IW +
Sbjct  782644  LKQTLFCNVILCIGLWFMDHCFTTDK*SGQCFKVCFLKMCHDHFKKKRLIWCK  782486



Lambda      K        H        a         alpha
   0.326    0.139    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 21295507849


  Database: genome.fa
    Posted date:  Oct 23, 2017  5:50 PM
  Number of letters in database: 1,310,797,575
  Number of sequences in database:  20,089



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40