TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 20,089 sequences; 1,310,797,575 total letters Query= SPP00001066_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Chicken Length=275 Score E Sequences producing significant alignments: (Bits) Value NOIK01000467.1 Anas zonorhyncha breed spot-billed scaffold469, w... 94.0 3e-19 NOIK01000844.1 Anas zonorhyncha breed spot-billed scaffold846, w... 66.2 2e-10 NOIK01005991.1 Anas zonorhyncha breed spot-billed scaffold6135, ... 47.4 2e-04 NOIK01000062.1 Anas zonorhyncha breed spot-billed scaffold64, wh... 47.0 3e-04 NOIK01000323.1 Anas zonorhyncha breed spot-billed scaffold325, w... 45.8 8e-04 NOIK01001289.1 Anas zonorhyncha breed spot-billed scaffold1293, ... 43.9 0.003 NOIK01000003.1 Anas zonorhyncha breed spot-billed scaffold3, who... 36.6 0.75 NOIK01000279.1 Anas zonorhyncha breed spot-billed scaffold281, w... 36.6 0.76 NOIK01000563.1 Anas zonorhyncha breed spot-billed scaffold565, w... 35.8 1.1 NOIK01000259.1 Anas zonorhyncha breed spot-billed scaffold261, w... 35.4 1.8 NOIK01000043.1 Anas zonorhyncha breed spot-billed scaffold44, wh... 35.4 1.8 NOIK01000116.1 Anas zonorhyncha breed spot-billed scaffold118, w... 35.0 2.1 NOIK01000631.1 Anas zonorhyncha breed spot-billed scaffold633, w... 33.1 8.0 NOIK01000330.1 Anas zonorhyncha breed spot-billed scaffold332, w... 33.1 8.9 >NOIK01000467.1 Anas zonorhyncha breed spot-billed scaffold469, whole genome shotgun sequence Length=593129 Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 48/56 (86%), Positives = 48/56 (86%), Gaps = 3/56 (5%) Frame = +2 Query 84 SPEYSLFVGDLTADVDDGMLYEFFVKVYPSCRGGKVVLDQAGVSK---GYGFVKFT 136 SPEYSLFVGDLT DVDDGMLYEFFVKVYPSCRGGKVVLDQAGVSK Y F FT Sbjct 315404 SPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQAGVSK*VMFYSFFSFT 315571 Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 39/48 (81%), Positives = 39/48 (81%), Gaps = 0/48 (0%) Frame = +1 Query 228 HTTCLFAIPSLDPAPHLDVHEANKQFMEQSEELYDALMDCHWQPLDTV 275 H TCL DP P LDVHEANKQFMEQSEELYDALMDCHWQPLDTV Sbjct 322660 HVTCLSVFLPSDPTPQLDVHEANKQFMEQSEELYDALMDCHWQPLDTV 322803 Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 40/43 (93%), Positives = 42/43 (98%), Gaps = 0/43 (0%) Frame = +2 Query 126 VSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA 168 + +GYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA Sbjct 318641 LCRGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA 318769 Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 33/36 (92%), Positives = 34/36 (94%), Gaps = 0/36 (0%) Frame = +1 Query 34 IPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 69 IPAGYCFVEFADLATAEKCLHKINGKPLPGATP + Sbjct 311218 IPAGYCFVEFADLATAEKCLHKINGKPLPGATPVSK 311325 Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/32 (100%), Positives = 32/32 (100%), Gaps = 0/32 (0%) Frame = +3 Query 2 EPYMDENFVSRAFATMGELVLSVKIIRNRLTG 33 EPYMDENFVSRAFATMGELVLSVKIIRNRLTG Sbjct 310338 EPYMDENFVSRAFATMGELVLSVKIIRNRLTG 310433 Score = 39.3 bits (90), Expect = 0.095, Method: Compositional matrix adjust. Identities = 17/17 (100%), Positives = 17/17 (100%), Gaps = 0/17 (0%) Frame = +1 Query 67 AKRFKLNYATYGKQPDN 83 AKRFKLNYATYGKQPDN Sbjct 314113 AKRFKLNYATYGKQPDN 314163 >NOIK01000844.1 Anas zonorhyncha breed spot-billed scaffold846, whole genome shotgun sequence Length=158617 Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 28/37 (76%), Positives = 32/37 (86%), Gaps = 0/37 (0%) Frame = +3 Query 239 DPAPHLDVHEANKQFMEQSEELYDALMDCHWQPLDTV 275 DP +LDV E N+QFME SEELYD+LM+CHWQPLDTV Sbjct 117354 DPQLYLDVDEMNRQFMETSEELYDSLMNCHWQPLDTV 117464 >NOIK01005991.1 Anas zonorhyncha breed spot-billed scaffold6135, whole genome shotgun sequence Length=5370 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 19/139 (14%) Frame = -1 Query 36 AGYCFVEF-----ADLATAEKCLHKINGKPLPGATPAKRFKLNYAT-YGKQPDNSPEYSL 89 AGY FVEF AD A + K+ GKP+ ++N A+ + K D ++ Sbjct 681 AGYGFVEFLSEEDADYAIKIMNMIKLYGKPI---------RVNKASAHNKNLDVGA--NI 535 Query 90 FVGDLTADVDDGMLYEFFVKVYPSCRGGKVVLD-QAGVSKGYGFVKFTDELEQKRALTEC 148 F+G+L ++D+ +LY+ F + K++ D G SKGY F+ F + A E Sbjct 534 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA-SFDASDAAIEA 358 Query 149 QGAVGLGSKPVRLSVAIPK 167 L ++P+ +S A K Sbjct 357 MNGQYLCNRPITVSYAFKK 301 Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (56%), Gaps = 0/61 (0%) Frame = -1 Query 1 LEPYMDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 60 L+P +DE + F+ G ++ + KI+R+ TG GY F+ FA ++ + +NG+ Sbjct 522 LDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 343 Query 61 L 61 L Sbjct 342 L 340 >NOIK01000062.1 Anas zonorhyncha breed spot-billed scaffold64, whole genome shotgun sequence Length=3613979 Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 19/139 (14%) Frame = +1 Query 36 AGYCFVEF-----ADLATAEKCLHKINGKPLPGATPAKRFKLNYAT-YGKQPDNSPEYSL 89 AGY FVEF AD A + K+ GKP+ ++N A+ + K D ++ Sbjct 3350674 AGYGFVEFLSEEDADYAIKIMNMIKLYGKPI---------RVNKASAHNKNLDVGA--NI 3350820 Query 90 FVGDLTADVDDGMLYEFFVKVYPSCRGGKVVLD-QAGVSKGYGFVKFTDELEQKRALTEC 148 F+G+L ++D+ +LY+ F + K++ D G SKGY F+ F + A E Sbjct 3350821 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA-SFDASDAAIEA 3350997 Query 149 QGAVGLGSKPVRLSVAIPK 167 L ++P+ +S A K Sbjct 3350998 MNGQYLCNRPITVSYAFKK 3351054 Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (56%), Gaps = 0/61 (0%) Frame = +1 Query 1 LEPYMDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 60 L+P +DE + F+ G ++ + KI+R+ TG GY F+ FA ++ + +NG+ Sbjct 3350833 LDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 3351012 Query 61 L 61 L Sbjct 3351013 L 3351015 >NOIK01000323.1 Anas zonorhyncha breed spot-billed scaffold325, whole genome shotgun sequence Length=1478460 Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/44 (48%), Positives = 30/44 (68%), Gaps = 0/44 (0%) Frame = -2 Query 85 PEYSLFVGDLTADVDDGMLYEFFVKVYPSCRGGKVVLDQAGVSK 128 P+YS+FVG+LT +V D L ++F+K YPSC K+ D G S+ Sbjct 1727 PDYSIFVGELTPEVGDFQLCDYFLKRYPSCIDCKIATDLLGYSR 1596 Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 0/38 (0%) Frame = -2 Query 130 YGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 167 + +V+F ++ +Q RAL +CQ A GLG K +RLS+ I K Sbjct 689 HAYVRFGEQGDQMRALQDCQNAPGLGGKRIRLSIGISK 576 >NOIK01001289.1 Anas zonorhyncha breed spot-billed scaffold1293, whole genome shotgun sequence Length=44935 Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/64 (44%), Positives = 39/64 (61%), Gaps = 2/64 (3%) Frame = +1 Query 89 LFVGDLTADVDDGMLYEFFVKVYPSCRGGKVVLD-QAGVSKGYGFVKFTDELEQKRALTE 147 +F GDL +V+D +L F + YPS KV+ D ++G +KGYGFV F D + RA+ E Sbjct 19246 IFCGDLGNEVNDEILARAFGR-YPSFLKAKVIRDKRSGKTKGYGFVSFKDPNDYVRAMRE 19422 Query 148 CQGA 151 GA Sbjct 19423 MNGA 19434 >NOIK01000003.1 Anas zonorhyncha breed spot-billed scaffold3, whole genome shotgun sequence Length=11111658 Score = 36.6 bits (83), Expect = 0.75, Method: Compositional matrix adjust. Identities = 17/37 (46%), Positives = 21/37 (57%), Gaps = 0/37 (0%) Frame = +1 Query 122 DQAGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 158 D GVS+ G V FT +L R L ECQ A+ L +P Sbjct 4543390 DAPGVSRRAGKVIFTRDLISARHLAECQSALTLPCRP 4543500 >NOIK01000279.1 Anas zonorhyncha breed spot-billed scaffold281, whole genome shotgun sequence Length=1115761 Score = 36.6 bits (83), Expect = 0.76, Method: Compositional matrix adjust. Identities = 20/48 (42%), Positives = 32/48 (67%), Gaps = 1/48 (2%) Frame = +3 Query 120 VLDQAGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 167 V+ + G SKG+GFV F+ E +A+TE G + +GSKP+ +++A K Sbjct 730731 VMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI-VGSKPLYVALAQRK 730871 Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (7%) Frame = +1 Query 85 PEYSLFVGDLTADVDDGMLYEFFVKVYP--SCRGGKVVLDQAGVSKGYGFVKFTDELEQK 142 P SL+VGDL DV + MLYE F P S R + ++ + S GY +V F + K Sbjct 721774 PMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRR--SLGYAYVNFQQPADGK 721947 Query 143 R 143 R Sbjct 721948 R 721950 >NOIK01000563.1 Anas zonorhyncha breed spot-billed scaffold565, whole genome shotgun sequence Length=421788 Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 4/90 (4%) Frame = -2 Query 81 PDN-SPEYSLFVGDLTADVDDGMLYEFFVKVYPSCRGGKVVLD-QAGVSKGYGFVKFTDE 138 P N S + +F+ +L D D+G+L++ F + + KV+ D KG+GFV T+ Sbjct 135251 PGNASSGWCIFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 135075 Query 139 LEQKRALTECQGAVGLGSKPVRLSVAIPKA 168 E A+ G LG K +++S K+ Sbjct 135074 EEAAMAIASLNG-YRLGDKILQVSFKTNKS 134988 >NOIK01000259.1 Anas zonorhyncha breed spot-billed scaffold261, whole genome shotgun sequence Length=1195253 Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/45 (38%), Positives = 30/45 (67%), Gaps = 1/45 (2%) Frame = +2 Query 120 VLDQAGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 164 V+ + G SKG+GFV F+ E +A+TE G + + +KP+ +++A Sbjct 121004 VMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRI-VATKPLYVALA 121135 Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust. Identities = 25/70 (36%), Positives = 36/70 (51%), Gaps = 7/70 (10%) Frame = +1 Query 78 GKQPDNSPEY---SLFVGDLTADVDDGMLYEFFVKVYP--SCRGGKVVLDQAGVSKGYGF 132 G+ ++P Y SL+VGDL DV + MLYE F P S R + ++ + S GY + Sbjct 110758 GRMNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRR--SLGYAY 110931 Query 133 VKFTDELEQK 142 V F + K Sbjct 110932 VNFQQPADGK 110961 >NOIK01000043.1 Anas zonorhyncha breed spot-billed scaffold44, whole genome shotgun sequence Length=4544224 Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/56 (34%), Positives = 29/56 (52%), Gaps = 1/56 (2%) Frame = +1 Query 5 MDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 60 ++ +++ R F G +V V I R + TG P G+ FVEF AEK + + P Sbjct 1181296 VNHSWIERVFGKCGNVVY-VSIPRYKSTGDPKGFAFVEFETKEQAEKAIEVSSSVP 1181460 >NOIK01000116.1 Anas zonorhyncha breed spot-billed scaffold118, whole genome shotgun sequence Length=2508977 Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/45 (38%), Positives = 30/45 (67%), Gaps = 1/45 (2%) Frame = -2 Query 120 VLDQAGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 164 V+ + G SKG+GFV F+ E +A+TE G + + +KP+ +++A Sbjct 367420 VMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRI-VSTKPLYVALA 367289 Score = 33.5 bits (75), Expect = 5.9, Method: Compositional matrix adjust. Identities = 25/72 (35%), Positives = 35/72 (49%), Gaps = 4/72 (6%) Frame = -1 Query 85 PEYSLFVGDLTADVDDGMLYEFFVKVYP--SCRGGKVVLDQAGVSKGYGFVKFTDELEQK 142 P SL+VGDL DV + MLYE F P S R + V + S GY ++ F + + Sbjct 372275 PLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRR--SLGYAYINFQQPADGE 372102 Query 143 RALTECQGAVGL 154 +GA+ L Sbjct 372101 PRRVVPRGALCL 372066 >NOIK01000631.1 Anas zonorhyncha breed spot-billed scaffold633, whole genome shotgun sequence Length=352697 Score = 33.1 bits (74), Expect = 8.0, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 0/45 (0%) Frame = -1 Query 19 ELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG 63 E +L+++I +N + G+CFVEF T H + + +PG Sbjct 141581 EGILAIQIKKNESSAFLQGFCFVEFERAETLLYLKHSFHAEAMPG 141447 >NOIK01000330.1 Anas zonorhyncha breed spot-billed scaffold332, whole genome shotgun sequence Length=938562 Score = 33.1 bits (74), Expect = 8.9, Method: Compositional matrix adjust. Identities = 14/38 (37%), Positives = 21/38 (55%), Gaps = 0/38 (0%) Frame = +3 Query 55 KINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVG 92 +I G LP PA R+++ A +QP + PE+S G Sbjct 896856 RIRGTALPSPVPAARWQMGIAAVQQQPGSRPEFSKVFG 896969 Lambda K H a alpha 0.320 0.137 0.419 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 65600664839 Database: genome.fa Posted date: Oct 23, 2017 5:50 PM Number of letters in database: 1,310,797,575 Number of sequences in database: 20,089 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40