TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 20,089 sequences; 1,310,797,575 total letters Query= SPP00001038_2.0 # Protein # SECIS binding protein 2 (SBP2) # Chicken Length=906 Score E Sequences producing significant alignments: (Bits) Value NOIK01000113.1 Anas zonorhyncha breed spot-billed scaffold115, w... 143 7e-33 NOIK01000075.1 Anas zonorhyncha breed spot-billed scaffold77, wh... 127 9e-28 NOIK01000026.1 Anas zonorhyncha breed spot-billed scaffold27, wh... 38.1 1.2 >NOIK01000113.1 Anas zonorhyncha breed spot-billed scaffold115, whole genome shotgun sequence Length=2568339 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 68/72 (94%), Positives = 71/72 (99%), Gaps = 0/72 (0%) Frame = +2 Query 679 YCSQVLSKEVDSCVTDLLKELVRFQDRLYQKDPVKAKIKRRLVMGLREVLKHLRLKKLKC 738 YCSQVLSKEVDSCVTDLLKELVRFQDR+YQKDPVKAKI+RRLVMGLREVLKHLRL +LKC Sbjct 1160612 YCSQVLSKEVDSCVTDLLKELVRFQDRMYQKDPVKAKIRRRLVMGLREVLKHLRLNRLKC 1160791 Query 739 VIISPNCEKIQS 750 VIISPNCEKIQS Sbjct 1160792 VIISPNCEKIQS 1160827 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 53/69 (77%), Positives = 59/69 (86%), Gaps = 4/69 (6%) Frame = +2 Query 748 IQSKGGLDETLHNIIDCACEQNIPFVFALNRKALGRCVNKAVPVSVVGIFSYDGAQ---- 803 + + GGLDETLHNIIDCACEQNIPFVFALNR+ALGRCVNK+VPVSVVGIFSYDGAQ Sbjct 1161566 LSATGGLDETLHNIIDCACEQNIPFVFALNRRALGRCVNKSVPVSVVGIFSYDGAQVSWE 1161745 Query 804 DHFHRMVQL 812 F+ V+L Sbjct 1161746 IKFYAFVEL 1161772 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 55/62 (89%), Positives = 58/62 (94%), Gaps = 0/62 (0%) Frame = +2 Query 530 FSVAGAIPLLSKESATATKNHRLNQGKMPHNPLDSSAPLVKKGKQREVPKAKRPTPLKKI 589 SV GAIPLLSKE ATATK+ RLNQGKMPHNPLDSSAPLVKKGKQREVPKAKRPTPLKK+ Sbjct 1156775 ISVGGAIPLLSKEPATATKSRRLNQGKMPHNPLDSSAPLVKKGKQREVPKAKRPTPLKKV 1156954 Query 590 IL 591 +L Sbjct 1156955 LL 1156960 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 48/77 (62%), Positives = 58/77 (75%), Gaps = 0/77 (0%) Frame = +2 Query 194 DRFNKTASKKSTQAPKIEPFPVSAFETTIVDFHKLQSLRSSEILNAHRKNGPACSVESNI 253 D +NKT SKKSTQ PKIE P+ AFETT++DFHK QS +SE N H ++GP CS ESN Sbjct 1145126 DSYNKTTSKKSTQTPKIESLPLPAFETTLLDFHKSQSFETSETWNVHHRSGPVCSAESNF 1145305 Query 254 MCLSQPQMSPLLNTELS 270 CLSQP+MSP LN ++S Sbjct 1145306 TCLSQPEMSPWLNGKVS 1145356 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 49/67 (73%), Positives = 57/67 (85%), Gaps = 1/67 (1%) Frame = +2 Query 804 DHFHRMVQLTTEARKAYKDMVAALEEEAEGRQTETKLSIVTTELEKSCLSETGKTSSRDQ 863 DHFHRMVQLT EARKAY+DM+AA EEEAEGR ET+L+IVTTE EKS LS+T KT+S + Sbjct 1162622 DHFHRMVQLTEEARKAYRDMIAAFEEEAEGRLRETELNIVTTEHEKSFLSDTDKTASSEL 1162801 Query 864 DEDIPNY 870 ED+PNY Sbjct 1162802 -EDVPNY 1162819 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/57 (72%), Positives = 45/57 (79%), Gaps = 0/57 (0%) Frame = +3 Query 478 SIMLEKKKMQETSKSGGKKSQIPVQLDLGGMLAVLEQKQQTEKSKQYSKSVVFSVAG 534 ++++ QETSKS KKSQ PVQLDLGGMLAVLEQKQQTEKSKQ SK VVFS G Sbjct 1154226 TVLIYTSFAQETSKSNSKKSQTPVQLDLGGMLAVLEQKQQTEKSKQSSKPVVFSGTG 1154396 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 31/52 (60%), Positives = 38/52 (73%), Gaps = 0/52 (0%) Frame = +2 Query 39 GIELSAEVKPFVPKYAAVTVAWSEPSAACVFPRYLTTGYTFVQEPSLDNVVR 90 G++LSAEV+PFVPK+AAV +AW+E S AC+ P Y T Y F Q PSLD V Sbjct 1142636 GVQLSAEVEPFVPKHAAVAMAWTESSVACMSPTYFTPCYPFFQNPSLDKYVH 1142791 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/53 (62%), Positives = 36/53 (68%), Gaps = 0/53 (0%) Frame = +3 Query 309 FDSGVFPEKSTDGSAQPCVSWAMVLSQPPKKTFSSPASECFPRYKGKQDSQAK 361 F S FP+ T SAQP ++WAMVLSQPPKKT SPASE PR K KQ S K Sbjct 1147947 FSSEAFPKAPTADSAQPGLTWAMVLSQPPKKTPLSPASEGLPRGKEKQGSPVK 1148105 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/46 (67%), Positives = 35/46 (76%), Gaps = 1/46 (2%) Frame = +2 Query 591 LKERELRKQQHLLEQTAVPKDGGNCCVSAENTTGDEALPQDSQAVV 636 LKERE RKQQHLLEQTA KD G+ C+ AENTT E LPQ S+A + Sbjct 1158572 LKEREQRKQQHLLEQTATLKD-GDTCLPAENTTEGEPLPQASEAGI 1158706 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/47 (66%), Positives = 33/47 (70%), Gaps = 4/47 (9%) Frame = +3 Query 636 VPVMQVAEGLLGST----KMKESTESSVTSKQSTSNLPKIHSRRFRD 678 VPVMQV EG L ST KESTESS+ SKQ LPKIHSRRFR+ Sbjct 1159368 VPVMQVTEGFLESTGTQESTKESTESSMASKQLNCCLPKIHSRRFRE 1159508 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/36 (75%), Positives = 29/36 (81%), Gaps = 5/36 (14%) Frame = +1 Query 871 IKIWKKKLEEEYNPYALELEKSAAADMVVLNSEEHH 906 +KIWK+KLEEEYNPYALEL KSA A NSEEHH Sbjct 1163620 VKIWKRKLEEEYNPYALELAKSATA-----NSEEHH 1163712 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/37 (59%), Positives = 27/37 (73%), Gaps = 0/37 (0%) Frame = +2 Query 412 IEDAEEFPDLAAASDGRKRLGSQKTSLTPAGRKQAEI 448 I DAEEFPDL A R +LGSQK+ LTPA +K+ E+ Sbjct 1151762 I*DAEEFPDLVTAFARRTKLGSQKSPLTPAVKKEVEV 1151872 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/26 (77%), Positives = 24/26 (92%), Gaps = 0/26 (0%) Frame = +1 Query 125 CNGSRIVSESAEQKYPIRQESKSLSK 150 CN S +VS+SA+QKYPIRQESK+LSK Sbjct 1143997 CNDSGLVSQSAQQKYPIRQESKNLSK 1144074 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/41 (54%), Positives = 27/41 (66%), Gaps = 0/41 (0%) Frame = +1 Query 447 EIHLPRVSCNSCSSTVDGALKVDVLSGKQASSIMLEKKKMQ 487 +IH P+ S +S S T D KVD LS KQA S+ L +KKMQ Sbjct 1152976 KIHYPKASWDSSSPTQDRTPKVDGLSWKQAPSLPLGRKKMQ 1153098 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 20/28 (71%), Positives = 22/28 (79%), Gaps = 0/28 (0%) Frame = +1 Query 283 REDVSVESIASSKALKETVASLIPSSFD 310 +EDVS E+ A SK L E VASLIPSSFD Sbjct 1146085 QEDVSAENKAPSKTLNEAVASLIPSSFD 1146168 >NOIK01000075.1 Anas zonorhyncha breed spot-billed scaffold77, whole genome shotgun sequence Length=3243839 Score = 127 bits (318), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 57/81 (70%), Positives = 72/81 (89%), Gaps = 0/81 (0%) Frame = +1 Query 676 FRDYCSQVLSKEVDSCVTDLLKELVRFQDRLYQKDPVKAKIKRRLVMGLREVLKHLRLKK 735 + YC+QVLSKE+D CVT LL+ELV FQ+R+YQKDP++AK +RRLVMGLREV KH++L K Sbjct 1779364 YNRYCNQVLSKEIDECVTLLLQELVSFQERIYQKDPMRAKARRRLVMGLREVTKHMKLNK 1779543 Query 736 LKCVIISPNCEKIQSKGGLDE 756 +KCVIISPNCEKIQSKG +++ Sbjct 1779544 IKCVIISPNCEKIQSKGIINK 1779606 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 40/53 (75%), Positives = 45/53 (85%), Gaps = 0/53 (0%) Frame = +3 Query 751 KGGLDETLHNIIDCACEQNIPFVFALNRKALGRCVNKAVPVSVVGIFSYDGAQ 803 +GGLDE L+N+I A EQ IPFVFAL RKALGRCVNK VPVSVVGIF+Y GA+ Sbjct 1780314 QGGLDEALYNVIAMAREQEIPFVFALGRKALGRCVNKLVPVSVVGIFNYSGAE 1780472 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 39/63 (62%), Gaps = 0/63 (0%) Frame = +3 Query 527 SVVFSVAGAIPLLSKESATATKNHRLNQGKMPHNPLDSSAPLVKKGKQREVPKAKRPTPL 586 S ++ V A P +KESA+ + NPLDS+AP VK+GK+RE+ K KRPT L Sbjct 1775967 SFLYLVGSAAPFHTKESASRKSLTKGQPSMGCLNPLDSTAPKVKRGKEREISKLKRPTAL 1776146 Query 587 KKI 589 KK+ Sbjct 1776147 KKV 1776155 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 0/45 (0%) Frame = +2 Query 490 SKSGGKKSQIPVQLDLGGMLAVLEQKQQTEKSKQYSKSVVFSVAG 534 SK+ GKKS+ PVQLDLG MLA LE++QQ K++Q + + S G Sbjct 1774427 SKAAGKKSKTPVQLDLGDMLAALEKQQQAMKARQITNTRPLSYTG 1774561 Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust. Identities = 18/27 (67%), Positives = 24/27 (89%), Gaps = 0/27 (0%) Frame = +3 Query 804 DHFHRMVQLTTEARKAYKDMVAALEEE 830 D F+++V LT EARKAY+DMVAA+E+E Sbjct 1780971 DLFNKLVSLTEEARKAYRDMVAAMEQE 1781051 >NOIK01000026.1 Anas zonorhyncha breed spot-billed scaffold27, whole genome shotgun sequence Length=5302363 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/55 (33%), Positives = 34/55 (62%), Gaps = 1/55 (2%) Frame = -2 Query 241 RKNGPACSVESNIMCLSQPQMSPLLNTELSSGK-CFYSHSYDTREDVSVESIASS 294 +KN PAC+ + ++ S + PLL + + +G+ CF HS DT++ ++S ++S Sbjct 3703818 KKNMPACNAFAAVVFQSSQLLGPLLGSAV*AGRVCFVQHSLDTQQSKGLQSASAS 3703654 Lambda K H a alpha 0.312 0.126 0.356 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 334334324170 Database: genome.fa Posted date: Oct 23, 2017 5:50 PM Number of letters in database: 1,310,797,575 Number of sequences in database: 20,089 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40