TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           20,089 sequences; 1,310,797,575 total letters



Query= SPP00001065_2.0 # Protein # Phosphoseryl-tRNA kinase  (PSTK) #
Chicken

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

NOIK01000265.1  Anas zonorhyncha breed spot-billed scaffold267, w...    117   2e-26


>NOIK01000265.1 Anas zonorhyncha breed spot-billed scaffold267, whole genome 
shotgun sequence
Length=1171298

 Score =   117 bits (292),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 56/68 (82%), Positives = 61/68 (90%), Gaps = 0/68 (0%)
 Frame = -1

Query  287     DKNVLPSEMKSLAEELNKLKAEFLEDLRQGSHVGNESGQQNPTVDPAASVLSSFQREATN  346
               DKNVLPSEMKSLAEELNKLKA FLEDLRQ +H+ NE+GQQN + DPA SV SSFQREAT+
Sbjct  791615  DKNVLPSEMKSLAEELNKLKAAFLEDLRQETHLKNETGQQNHSFDPATSVFSSFQREATS  791436

Query  347     VVNKYILK  354
               VVNKYILK
Sbjct  791435  VVNKYILK  791412


 Score = 94.4 bits (233),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 45/73 (62%), Positives = 55/73 (75%), Gaps = 0/73 (0%)
 Frame = -3

Query  155     SLGFCQLFLECPLELCLQRNRLRGSPVPEGTICRMAQRVEVPEPEKNPWEQNSLVLSSSA  214
               SL FCQLFL+ PLE CL+RNRLR  P+P+ TI  MA R+E P+P KN WEQNSLVL SS 
Sbjct  793083  SLSFCQLFLDSPLEQCLRRNRLRSHPLPDETIRLMATRIEPPDPRKNAWEQNSLVLKSSE  792904

Query  215     CAPEEQCDSGLME  227
               C  E++ D+ LM+
Sbjct  792903  CPSEDEYDAVLMK  792865


 Score = 75.5 bits (184),  Expect = 5e-13, Method: Compositional matrix adjust.
 Identities = 44/60 (73%), Positives = 50/60 (83%), Gaps = 0/60 (0%)
 Frame = -3

Query  1       MERADGGRVVLCVLCGLPAAGKSTlaralrrqlplrqGWDCALLVYDDLIPEEAWGRGEP  60
               MER  G RVVLC+LCGLPAAGKSTL+RAL R LP  QGWDC++LVYD+LIP+EA G  EP
Sbjct  793635  MERTGGSRVVLCLLCGLPAAGKSTLSRALSRLLPPHQGWDCSVLVYDELIPQEAPGPPEP  793456


 Score = 60.5 bits (145),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 28/31 (90%), Positives = 29/31 (94%), Gaps = 0/31 (0%)
 Frame = -2

Query  256     EADRAICAASTVHQADQTCRRIISQTMKEAK  286
               EADR  CAASTVHQADQTCRR+ISQTMKEAK
Sbjct  791920  EADRVACAASTVHQADQTCRRVISQTMKEAK  791828


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 20/23 (87%), Positives = 23/23 (100%), Gaps = 0/23 (0%)
 Frame = -3

Query  131     CLVLDDNFYYRSMRHEVFQLARK  153
               C+VLDDNFYYRSMR+EV+QLARK
Sbjct  793338  CIVLDDNFYYRSMRYEVYQLARK  793270


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/27 (81%), Positives = 22/27 (81%), Gaps = 0/27 (0%)
 Frame = -1

Query  229     FHVQIINLLGAALENPVKQNEENTEQK  255
                  QIINLL  ALENPVKQNEENTEQK
Sbjct  792482  LSAQIINLLATALENPVKQNEENTEQK  792402



Lambda      K        H        a         alpha
   0.317    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 98604537394


  Database: genome.fa
    Posted date:  Oct 23, 2017  5:50 PM
  Number of letters in database: 1,310,797,575
  Number of sequences in database:  20,089



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40