TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           20,089 sequences; 1,310,797,575 total letters



Query= SPP00001056_2.0 # Protein # Methionine-R-sufoxide reductase 1
(MSRB1) # Chicken

Length=107
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

NOIK01000373.1  Anas zonorhyncha breed spot-billed scaffold375, w...    100   1e-38
NOIK01000685.1  Anas zonorhyncha breed spot-billed scaffold687, w...  30.8    4.8  
NOIK01000206.1  Anas zonorhyncha breed spot-billed scaffold208, w...  30.4    8.2  


>NOIK01000373.1 Anas zonorhyncha breed spot-billed scaffold375, whole genome 
shotgun sequence
Length=806883

 Score =   100 bits (248),  Expect(2) = 1e-38, Method: Compositional matrix adjust.
 Identities = 46/49 (94%), Positives = 47/49 (96%), Gaps = 0/49 (0%)
 Frame = -3

Query  19      GVYVCARCGYELFSSRAKYEHSSPWPAFTETIHEDSVAKRKERPGALKV  67
               G+Y CARCGYELFSSRAKYEHSSPWPAFTETIHEDSVAKRKERPGA KV
Sbjct  433165  GIYACARCGYELFSSRAKYEHSSPWPAFTETIHEDSVAKRKERPGAFKV  433019


 Score = 80.9 bits (198),  Expect(2) = 1e-38, Method: Compositional matrix adjust.
 Identities = 39/42 (93%), Positives = 41/42 (98%), Gaps = 0/42 (0%)
 Frame = -2

Query  66      KVSCGKCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFIPKGEG  107
               +VSCGKCGNGLGHEFLNDGPKRGQSRF IFSSSLKFIPKG+G
Sbjct  432920  QVSCGKCGNGLGHEFLNDGPKRGQSRF*IFSSSLKFIPKGKG  432795


>NOIK01000685.1 Anas zonorhyncha breed spot-billed scaffold687, whole genome 
shotgun sequence
Length=293655

 Score = 30.8 bits (68),  Expect = 4.8, Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (57%), Gaps = 2/53 (4%)
 Frame = -1

Query  11      VFKDHFEPGVYVCARCGYELFSSRAKYEHS--SPWPAFTETIHEDSVAKRKER  61
               +F +HF  GV++ +R   EL  + A+++H+   PW AF  + H     K++ R
Sbjct  127845  LFPNHF*WGVFLFSRA*SELLHTAARWQHAG*KPWLAFEVS*HLLGCHKQRIR  127687


>NOIK01000206.1 Anas zonorhyncha breed spot-billed scaffold208, whole genome 
shotgun sequence
Length=1529656

 Score = 30.4 bits (67),  Expect = 8.2, Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
 Frame = +3

Query  4        CSFFGGEVF--KDHFEPG-VYVC-ARCGYELFSSRAKYEHSSPWPAFTETIHEDSVAKRK  59
                CS  GG       H  PG V  C ++    L SS  +   + PWP    T     +  R+
Sbjct  1432218  CSCLGGSATCPGPHNSPGSVSPCPSKAAVGLGSSSTQPYLAWPWPTCKPTSWHWPIPDRR  1432397

Query  60       ERPGALKVSCGKCGN  74
                E P AL +  G CG 
Sbjct  1432398  EVPAALWLPRGSCGT  1432442



Lambda      K        H        a         alpha
   0.321    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 10882130675


  Database: genome.fa
    Posted date:  Oct 23, 2017  5:50 PM
  Number of letters in database: 1,310,797,575
  Number of sequences in database:  20,089



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40