------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = - Positions = 48650 - 48579 Found by: Infernal (score=26.89) Covels (score=22.34) Stem2 length = 10 Apical loop length = 13 Insertion in stem2 = 1, 0 Free Energy = -17.72 ..(((((((.......((((((((((.(((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc (((({((((---((..{[[[((((((.({(((.....--........)))})))))))]]]}..--..))))))})))) target UGGGAUCAU---GGUAUGAAUUGCCCUCUGUAAACCC--UUCCAGGAUGCUGGGGCAAGGAUGU--UCUUAUGACCCUG **** ^^ ****