TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 20,089 sequences; 1,310,797,575 total letters Query= SPP00001064_2.0 # Protein # Eukaryotic elongation factor (eEFsec) # Chicken Length=531 Score E Sequences producing significant alignments: (Bits) Value NOIK01000229.1 Anas zonorhyncha breed spot-billed scaffold231, w... 432 1e-131 NOIK01007809.1 Anas zonorhyncha breed spot-billed scaffold8566, ... 137 3e-32 NOIK01000464.1 Anas zonorhyncha breed spot-billed scaffold466, w... 44.7 0.006 NOIK01001801.1 Anas zonorhyncha breed spot-billed scaffold1810, ... 43.9 0.010 NOIK01000166.1 Anas zonorhyncha breed spot-billed scaffold168, w... 43.9 0.010 >NOIK01000229.1 Anas zonorhyncha breed spot-billed scaffold231, whole genome shotgun sequence Length=1416433 Score = 432 bits (1111), Expect = 1e-131, Method: Compositional matrix adjust. Identities = 206/215 (96%), Positives = 209/215 (97%), Gaps = 1/215 (0%) Frame = +3 Query 205 VTKKVKSMQMFHTPVTYAMQGDRVGICVTQFDPKLLERGLICTPESLHTIHAAIISLKKI 264 VTKKVKSMQMFHTPVTYAMQGDRVGICVTQFDPKLLERGL+CTPESLHTIHAAIISLKKI Sbjct 1176831 VTKKVKSMQMFHTPVTYAMQGDRVGICVTQFDPKLLERGLVCTPESLHTIHAAIISLKKI 1177010 Query 265 QYFRGALQTKAKFHITVGHETVMGRVMFFSPAPADFNEEIQENVFDFDKDYLYQEEYLSK 324 QYFRGALQTKAKFHITVGHETVMGRVMFFSPAPADFNEEIQEN FDF+KDYLYQEEYLSK Sbjct 1177011 QYFRGALQTKAKFHITVGHETVMGRVMFFSPAPADFNEEIQENAFDFEKDYLYQEEYLSK 1177190 Query 325 DSKPSEENKENGQS-EVQLPKQQWALLEFEKPVTCPKLCLVIGSKLDTDIHANTCRLAFH 383 DSK SEENKEN QS EVQLP+QQWALLEFEKPVTCPKLCLVIGSKLDTDIHANTCRLAFH Sbjct 1177191 DSKSSEENKENDQSGEVQLPRQQWALLEFEKPVTCPKLCLVIGSKLDTDIHANTCRLAFH 1177370 Query 384 GVLLQGMEDKNYAETFLPKLKVYKQKHKEGQVERV 418 GVLLQGMEDKNY ETFLPKLKVYK KHKEGQVERV Sbjct 1177371 GVLLQGMEDKNYIETFLPKLKVYKLKHKEGQVERV 1177475 Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 69/70 (99%), Positives = 69/70 (99%), Gaps = 0/70 (0%) Frame = +2 Query 48 GAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKMVVVLNKIDLLPEAKRQSAIEKMTK 107 GAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKMVVVLNKIDLLPE KRQSAIEKMTK Sbjct 1140761 GAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKMVVVLNKIDLLPEGKRQSAIEKMTK 1140940 Query 108 KMQKTLENTK 117 KMQKTLENTK Sbjct 1140941 KMQKTLENTK 1140970 Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 56/63 (89%), Positives = 60/63 (95%), Gaps = 0/63 (0%) Frame = +2 Query 144 VSELIEVLKSQAYLPSRDPSGHFLMAVDHCFSIKGQGTVMTGTILSGSVSLGDNVEIPAL 203 +S +VLKSQAYLPSRDPSG+FLMAVDHCFSIKGQGTVMTGTILSGSVSLGDNVEIPAL Sbjct 1147586 LSFFSQVLKSQAYLPSRDPSGNFLMAVDHCFSIKGQGTVMTGTILSGSVSLGDNVEIPAL 1147765 Query 204 KVT 206 KV+ Sbjct 1147766 KVS 1147774 Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 66/87 (76%), Positives = 70/87 (80%), Gaps = 11/87 (13%) Frame = +2 Query 456 SCLVMY----------VLVCL-LFLTGGLKPETKMLLsaaskkkskagkgDANKEDESSK 504 SCL ++ VL C+ L T GLKPETK LL+AASKKKSKAGKGDANKEDESSK Sbjct 1230383 SCLFIFSRHTEI*C*AVLSCMFLVFTDGLKPETKTLLTAASKKKSKAGKGDANKEDESSK 1230562 Query 505 NDSAQPVTITLLFKRYVFDTQKKMIQS 531 NDSAQPVTITLLFKRYVFDTQKKMIQS Sbjct 1230563 NDSAQPVTITLLFKRYVFDTQKKMIQS 1230643 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/88 (55%), Positives = 48/88 (55%), Gaps = 40/88 (45%) Frame = +2 Query 1 RVLNVNVGVLGHIDSGKTALARALSTTGSTAAFDR------------------------- 35 RVLNVNVGVLGHIDSGKTALARALSTTGSTAAFDR Sbjct 1052816 RVLNVNVGVLGHIDSGKTALARALSTTGSTAAFDRAPQSRARGITLDLGFSCFRTALPPQ 1052995 Query 36 ---------------PGHASLIRTIIGG 48 PGHASLIRTIIGG Sbjct 1052996 LGPGPGELQFTLVDCPGHASLIRTIIGG 1053079 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/88 (55%), Positives = 48/88 (55%), Gaps = 40/88 (45%) Frame = +1 Query 1 RVLNVNVGVLGHIDSGKTALARALSTTGSTAAFDR------------------------- 35 RVLNVNVGVLGHIDSGKTALARALSTTGSTAAFDR Sbjct 1061092 RVLNVNVGVLGHIDSGKTALARALSTTGSTAAFDRAPQSRARGITLDLGFSCFRTALPPQ 1061271 Query 36 ---------------PGHASLIRTIIGG 48 PGHASLIRTIIGG Sbjct 1061272 LGPGPGELQFTLVDCPGHASLIRTIIGG 1061355 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/38 (89%), Positives = 35/38 (92%), Gaps = 0/38 (0%) Frame = +3 Query 117 KFCGCPIVAVAAKPGGPEAPESENPLGVSELIEVLKSQ 154 +FCGCPIVAVAAKPGGPEAPESENPLGVSELIEV Q Sbjct 1144803 RFCGCPIVAVAAKPGGPEAPESENPLGVSELIEVPAEQ 1144916 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/27 (96%), Positives = 27/27 (100%), Gaps = 0/27 (0%) Frame = +3 Query 417 RVMDDYSVIGRSLFKKETNIQIFVGLK 443 +VMDDYSVIGRSLFKKETNIQIFVGLK Sbjct 1190562 QVMDDYSVIGRSLFKKETNIQIFVGLK 1190642 >NOIK01007809.1 Anas zonorhyncha breed spot-billed scaffold8566, whole genome shotgun sequence Length=20942 Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 72/82 (88%), Positives = 75/82 (91%), Gaps = 2/82 (2%) Frame = +2 Query 38 HASLIRTI--IGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKMVVVLNKIDLLPE 95 +A+ I T+ GAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKMVVVLNKIDLLPE Sbjct 19715 YAATIPTVNSFPGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKMVVVLNKIDLLPE 19894 Query 96 AKRQSAIEKMTKKMQKTLENTK 117 KRQSAIEKMTKKMQKTLENTK Sbjct 19895 GKRQSAIEKMTKKMQKTLENTK 19960 >NOIK01000464.1 Anas zonorhyncha breed spot-billed scaffold466, whole genome shotgun sequence Length=970131 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/82 (33%), Positives = 42/82 (51%), Gaps = 3/82 (4%) Frame = -3 Query 165 HFLMAVDHCFSIKGQGTVMTGTILSGSVSLGDNVEIPALKVTKKVKSMQMFHTPVTYAMQ 224 HF++ C G GTV G + +G + G V + +T +VKS++M H ++ A+ Sbjct 839035 HFVLL---CPCSTGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALP 838865 Query 225 GDRVGICVTQFDPKLLERGLIC 246 GD VG V K + RG +C Sbjct 838864 GDNVGFNVKNVSVKDIRRGNVC 838799 >NOIK01001801.1 Anas zonorhyncha breed spot-billed scaffold1810, whole genome shotgun sequence Length=25072 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/73 (36%), Positives = 38/73 (52%), Gaps = 0/73 (0%) Frame = +3 Query 174 FSIKGQGTVMTGTILSGSVSLGDNVEIPALKVTKKVKSMQMFHTPVTYAMQGDRVGICVT 233 FS G GTV G + +G + G V + VT +VKS++M H ++ A+ GD VG V Sbjct 2241 FSSAGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVK 2420 Query 234 QFDPKLLERGLIC 246 K + RG + Sbjct 2421 NVSVKDVRRGNVA 2459 >NOIK01000166.1 Anas zonorhyncha breed spot-billed scaffold168, whole genome shotgun sequence Length=1901283 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/73 (36%), Positives = 38/73 (52%), Gaps = 0/73 (0%) Frame = -3 Query 174 FSIKGQGTVMTGTILSGSVSLGDNVEIPALKVTKKVKSMQMFHTPVTYAMQGDRVGICVT 233 FS G GTV G + +G + G V + VT +VKS++M H ++ A+ GD VG V Sbjct 860959 FSSAGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVK 860780 Query 234 QFDPKLLERGLIC 246 K + RG + Sbjct 860779 NVSVKDVRRGNVA 860741 Lambda K H a alpha 0.319 0.135 0.387 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 173720346400 Database: genome.fa Posted date: Oct 23, 2017 5:50 PM Number of letters in database: 1,310,797,575 Number of sequences in database: 20,089 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40