TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           20,089 sequences; 1,310,797,575 total letters



Query= SPP00001030_2.0 # Protein # Iodothyronine deiodinase 1 (DIO1) #
Chicken

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

NOIK01000384.1  Anas zonorhyncha breed spot-billed scaffold386, w...    163   4e-43
NOIK01000233.1  Anas zonorhyncha breed spot-billed scaffold235, w...    159   1e-41
NOIK01000047.1  Anas zonorhyncha breed spot-billed scaffold48, wh...    121   1e-28


>NOIK01000384.1 Anas zonorhyncha breed spot-billed scaffold386, whole genome 
shotgun sequence
Length=791277

 Score =   163 bits (413),  Expect = 4e-43, Method: Compositional matrix adjust.
 Identities = 76/102 (75%), Positives = 87/102 (85%), Gaps = 0/102 (0%)
 Frame = +3

Query  20      SVVVGKTMMILFPDTTKRYILKLGEKSRMNQNPKFSYENWGPTFFSFQYLLFVLKVKWRR  79
               SVV+GKT+M+LFP+T KR+ILK GEKSRMNQNPKFSYENWGPTFFSFQYLLFVLKVKW+R
Sbjct  457089  SVVIGKTLMVLFPNTMKRHILKQGEKSRMNQNPKFSYENWGPTFFSFQYLLFVLKVKWKR  457268

Query  80      LEDEAHEGRPAPNTPVVALNGEMQHLFSFMRDNRPLILNFGS  121
               LEDEA+EG PAPNTPVV   G+++HLF FMR     +  FG 
Sbjct  457269  LEDEAYEGWPAPNTPVVTSQGDIRHLFDFMRGQSSSL*WFGC  457394


 Score =   124 bits (312),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 64/74 (86%), Gaps = 2/74 (3%)
 Frame = +1

Query  159     DGWAFRNNVVIKNHRSLEDRKTAAQFLQQKNPLCPVVLDTMENLSSSKYAALPERLYILQ  218
               DGWAF+NN+VI NHRSLEDRK AAQ LQ+ NPLCPVVLDTMENLSSSKYAALPERLY+LQ
Sbjct  460204  DGWAFKNNIVINNHRSLEDRKIAAQLLQKNNPLCPVVLDTMENLSSSKYAALPERLYLLQ  460383

Query  219     AGNVIYKGGVGPWN  232
                G VIYK  V P N
Sbjct  460384  QGKVIYK--VKPIN  460419


 Score = 96.7 bits (239),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 46/51 (90%), Positives = 48/51 (94%), Gaps = 0/51 (0%)
 Frame = +3

Query  107     SFMRDNRPLILNFGSCTUPSFMLKFDEFNKLVKDFSSIADFLIIYIEEAHA  157
               +F+  NRPLILNFGSCT PSFMLKFDEFNKLVKDFSSIADFLIIYIEEAHA
Sbjct  458832  AFLLGNRPLILNFGSCT*PSFMLKFDEFNKLVKDFSSIADFLIIYIEEAHA  458984


 Score = 40.4 bits (93),  Expect = 0.033, Method: Compositional matrix adjust.
 Identities = 15/17 (88%), Positives = 17/17 (100%), Gaps = 0/17 (0%)
 Frame = +3

Query  225     KGGVGPWNYHPQEIRAV  241
               +GGVGPWNYHPQEIRA+
Sbjct  460881  QGGVGPWNYHPQEIRAI  460931


>NOIK01000233.1 Anas zonorhyncha breed spot-billed scaffold235, whole genome 
shotgun sequence
Length=1378994

 Score =   159 bits (402),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 79/165 (48%), Positives = 105/165 (64%), Gaps = 2/165 (1%)
 Frame = +2

Query  84       AHEGRPAPNTPVVALNGEMQ-HLFSFMRDNRPLILNFGSCTUPSFMLKFDEFNKLVKDFS  142
                AH G  APN  V+ L+G+ +  +  F R  RPLILNFGSCT P FM +   F +LV  F 
Sbjct  1078469  AHVGSLAPNPEVIQLDGQKRLRILDFARGKRPLILNFGSCT*PPFMARLRSFQRLVAHFV  1078648

Query  143      SIADFLIIYIEEAHAVDGWAFRNNVV-IKNHRSLEDRKTAAQFLQQKNPLCPVVLDTMEN  201
                 IADFL++YIEEAH  DGW   +    I  H+ L+DR  AAQ +++  P CP+ +DTM+N
Sbjct  1078649  DIADFLLVYIEEAHPSDGWVSSDAAYNIPKHQCLQDRLRAAQLMREGAPDCPLAVDTMDN  1078828

Query  202      LSSSKYAALPERLYILQAGNVIYKGGVGPWNYHPQEIRAVLEKLK  246
                 SS+ Y A  ERLYI+Q   V+Y+GG GP  Y   E+R+ L++ K
Sbjct  1078829  ASSAAYGAYFERLYIIQEEKVMYQGGRGPEGYKISELRSWLDQYK  1078963


>NOIK01000047.1 Anas zonorhyncha breed spot-billed scaffold48, whole genome shotgun 
sequence
Length=4459198

 Score =   121 bits (304),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 65/152 (43%), Positives = 91/152 (60%), Gaps = 7/152 (5%)
 Frame = -1

Query  100      GEMQHLFSFMRDNRPLILNFGSCTUPSFMLKFDEFNKLVKDFSSIADFLIIYIEEAHAVD  159
                G   HL  F    RPL++NFGS T P F  +   F+KLV++FS +ADFL++YI+EAH  D
Sbjct  2693110  GTKCHLLDFADSERPLVVNFGSAT*PPFTSQLSAFSKLVEEFSGVADFLLVYIDEAHPSD  2692931

Query  160      GWAF----RNNVVIKNHRSLEDRKTAAQFLQQK---NPLCPVVLDTMENLSSSKYAALPE  212
                GWA      ++  +K HR+ EDR  AA  L ++    P C VV D M+N ++  Y    E
Sbjct  2692930  GWAAPGISPSSFEVKKHRNQEDRCAAAHQLLERFSLPPQCQVVADCMDNNANVAYGVSFE  2692751

Query  213      RLYILQAGNVIYKGGVGPWNYHPQEIRAVLEK  244
                R+ I+Q   + Y GG GP+ Y+ QE+R  LE+
Sbjct  2692750  RVCIVQRQKIAYLGGKGPFFYNLQEVRLWLEQ  2692655



Lambda      K        H        a         alpha
   0.323    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 53438774094


  Database: genome.fa
    Posted date:  Oct 23, 2017  5:50 PM
  Number of letters in database: 1,310,797,575
  Number of sequences in database:  20,089



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40