_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-13
 Query name: gi|955484391|ref|XP_004419885.2| PREDICTED: selenoprotein K [Ceratotherium simum simum]
 Query range: 1-94  (total 94)

 Target: /data/www-rg/seblastian_results/143044226/tempfiles/temptarget.fasta
 Chromosome: NW_018341531.1:subseq_705518,61679_ Strand: -
 Positions:
 -Exon 1  36038        36056
 -Exon 2  31576        31666
 -Exon 3  29992        30075
 -Exon 4  29336        29426

 Redox box: no

Query   MVYISNG <---Intron---> QVLDSRSQSPWRLSFITDFFWGIAEFVVLF <---Intron---> FKTLLQQDVKKRRGYGSSSDSRYDDGRG <-
        ||||||| <   4371bp   > |||||||||||||||||||||||||||||| <   1500bp   > |/|||||||||||||||||||||||||| < 
Target  MVYISNG                QVLDSRSQSPWRLSFITDFFWGIAEFVVLF                FRTLLQQDVKKRRGYGSSSDSRYDDGRG   
        agtatag                cgtgaaactctacttaagtttgaggtggtt                taaccccggaaaagtgattgtatgggag   
        ttatca                gattagggaccggtcttcattggtcattttt                tgcttaaataagggaggccacgaaaggg   
        gtccgt                aaggccgtgcagaatcaatccgaatgcgtg                tcatgtaatgagaaccacattcatttaa    
                                                                                                            

Query   --Intron---> PPGNPP-RRMGRINHLHGPSPPPMAGGUGR
          565bp    > |||||| ||||||||| ||/||||||||||
Target               PPGNPPRRRMGRINHLQGPNPPPMAGGUGR
                     ccgaccaaaagcaacccgcacccagggtga
                     ccgaccgggtggtaatagcaccctcggggg
                    gaaacccaaagtatttggcttttagctaaag
                                                *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 375 ; UGA-SECIS: 381

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = NW_018341531.1:subseq_705518,61679_ Strand = - Positions = 28960 - 28873
 Found by:  Infernal (score=23.36) Covels (score=39.16)
 Stem2 length = 11   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -9.63

         ..(((((((..............(((((((((((((((.................)))))))))))))))..........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...({((((..............{[[((((((((((((.................))))))))))))]]}......-...))))})...
 target  UGCUCUGUGUCCUCACAGACGAAUGAGGUCAUGCUGGGAAUUCCCUCCGCAGGGAUCUGGCAUGACUGACACGCAG-UUCUAUAAAUGC
                                ****           ^^                          ****