_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-43
 Query name: gi|946682873|ref|XP_006193513.2| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial, partial [Camelus ferus]
 Query range: 16-219  (total 219)

 Target: /data/www-rg/seblastian_results/687743714/tempfiles/temptarget.fasta
 Chromosome: NW_018331773.1:subseq_292900,61117_ Strand: +
 Positions:
 -Exon 1  29976        30169
 -Exon 2  30247        30391
 -Exon 3  30529        30680
 -Exon 4  30792        30816
 -Exon 5  30956        31015
 -Exon 6  31088        31117

 Redox box: no

Query   LAPLAGRAERVGQGDADQGLAPRGPQSAQHALPLQCASRDDWRCAHSMHEFSAKDIDGHMVNLDKYR <---Intron---> GYVCIVTNVASQUGKTD
         /||   | |||/  ||    |||  /|| || |||||||||||| |||||||||||| |||||||| <    77bp    > |/||||||||||||||/
Target  FSPLGTLAGRVGRAAAD--ATPRGQSAAQPALALQCASRDDWRCARSMHEFSAKDIDGRMVNLDKYR                GHVCIVTNVASQUGKTE
        ttctgacggcggcgggg--gaccgctggccgcgtctgtcggtctgctacgttgagaggcagacgatc                gcgtagaaggtctgaag
        tcctgctcggtggccca--cccggacccacctctagccgaagggcgctaatccaataggttataaag                gatgttcatccaggaca
        ttcatcgtgagcagtgc--cgcatggctaattcggcgccccgcttccgcacacgcccgcgtcgcgc                gccgcccctgcgaacgta
                                                                                                       *    

Query   VNYTQLVDLHARYAECGLRILAFPCNQFGRQ <---Intron---> EPGSNAEIKEFAAGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGKGILGN <
        ||||||||||||||||||||||||||||||| <   137bp    > ||||||||||||||||||||/||||||||||||||||||||||||/|/||| <
Target  VNYTQLVDLHARYAECGLRILAFPCNQFGRQ                EPGSNAEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKVQPKGRGMLGN  
        gataccggccgctggtgtcacgtctactgac                gcgaaggaagtgggtagatgataaatgaggggccctataagccagagacga  
        taacattatacgacaggtgttctcgaatgga                acggacataatccgaatatattgatgtagaacactgagtatacagggttga  
        acctggccgccaccgttagcgcctccgtggg                gagttggcagtctctccactgccgctatgctcctggaggacgcgggcgga   
                                                                                                            

Query   ---Intron---> AIKWNFTK <---Intron---> FLIDKNGCVVKRYGPMEEPL <---Intron---> VIEKDLPCYL
           111bp    > |||||||| <   139bp    > |||||||||||||||||||| <    72bp    > ||||||||||
Target                AIKWNFTK                FLIDKNGCVVKRYGPMEEPL                VIEKDLPCYL
                      gaatataa                tcagaagtggactgcaggcc                gagagccttc
                      ctagatca                tttaaaggttagagctaact                ttaaatcgat
                     cccagcccg                cctcgtctggggttcgagcg                gaggcgaccc
                                                                                            
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 54 ; UGA-SECIS: 426

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = NW_018331773.1:subseq_292900,61117_ Strand = + Positions = 31172 - 31244
 Found by:  Infernal (score=30.07) Covels (score=35.02)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -14.04

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({({((((......([[{((((((((({(.....-.........)})))))))))}]])----...))))})})..
 target  CUUCCCCCGGUGCCUAUGACGGUCUGUCUGAAAACC-AGCCCCUGGUGGGGCAGACCCGAG----AACCUGGCGUGCA
                         ****           ^^^                       ****