_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-25
 Query name: gi|965795156|ref|XP_011968829.2| PREDICTED: glutathione peroxidase 3 [Ovis aries musimon] >gi|965939247|ref|XP_014951639.1| PREDICTED: glutathione peroxidase 3 [Ovis aries]
 Query range: 1-226  (total 226)

 Target: /data/www-rg/seblastian_results/736399075/tempfiles/temptarget.fasta
 Chromosome: NW_018343298.1:subseq_0,62722_ Strand: -
 Positions:
 -Exon 1  17803        17889
 -Exon 2  12692        12845
 -Exon 3  11361        11478
 -Exon 4  10818        10917
 -Exon 5  10126        10344

 Redox box: no

Query   MARLLRASCLLSLLLAGFIPPSQGQEKSK <---Intron---> MDCHAGVGGTIYEYGALTIDGEEYIPFKRYAGKYILFVNVASYUGLTGQYVE <-
        |||| |||||||||||||/|||||||||| <   4957bp   >  |||||||||||||||||||||||||||/||||||||||||||||||||||| < 
Target  MARLFRASCLLSLLLAGFVPPSQGQEKSK                TDCHAGVGGTIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLTGQYVE   
        agcctcgttcctcccggtgccacgcgata                agtcgggggaatgtggcaaggggtactactggatactgaggattgcagctgg   
        tcgttgccgttctttcgttccgagaaaca                cagacgtggctaaagctctagaaatctaaacgaattttatcgaggtcgaat    
        gcgccgacctccgcgccctggcgaggggg                gcctttgcccctgcgcccctggaccctggctcaccccccgcccacggcgct    
                                                                                                *           

Query   --Intron---> LNALQEELEPFGLVILGFPCNQFGKQEPGENSEILATLK <---Intron---> YVRPGGGFTPNFQLFEKGDVNGEKEQKFYTFL
          1213bp   > ||||||||||||||||||||||||||||||||||||/|| <   443bp    > |||||||| |||||||||||||||||||||||
Target               LNALQEELEPFGLVILGFPCNQFGKQEPGENSEILASLK                YVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFL
                     cagccggcgctgcgacgtctactgacgcggatgacgtca                tgccgggtacatcttgagggaggagcattatc
                    atactaaatactgttttgtcgaatgaaacgaacattccta                atgcgggttcatattaagatagaaaaatactt
                    agtaggagtaattgctgcccccataaaaaagcggcaccc                gttaatgcccctcagtgactgtggagggccacg
                                                                                                            

Query   K <---Intron---> NSCPPTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHRTTVNSVKMDILTYMRRRAVLEAKGK
        | <   473bp    > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||/| |||
Target  K                NSCPPTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHRTTVNSVKMDILTYMRRRAVMEVKGK
        a                attccatgccgtcgccttgcaagcgactatgatcggcggacaacttccaagatgaagacatacccggaggaga
        a                acgccccattgccggttgactataatggataatttgcagtcttggaagcctactatattcatgggcttataga
        g                ccttttggcatatcctcgacggctccggctgacgggacccccgcgccctgcctcggccgccggggacgacggg
                                                                                                  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 590 ; UGA-SECIS: 1049

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = NW_018343298.1:subseq_0,62722_ Strand = - Positions = 9535 - 9462
 Found by:  Infernal (score=17.0) Covels (score=28.2)
 Stem2 length = 9   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -15.14

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...((([((---....([[((({(((({(((.....--........)))}))))})))]])......-...))])))...
 target  GGCGGCAUC---GCCAUGAAGGAGGGGCCCGAAGCC--CUUGUGGGCGGACCUCCCUUGAGCCUGUC-UGAGGGGCCAGC
                         ****           ^^                        ****