------- SECIS element -- id:1 -- grade:B ---- Chromosome = NW_018329262.1:subseq_1751320,83039_ Strand = + Positions = 53168 - 53246 Found by: Infernal (score=17.0) Covels (score=12.55) Stem2 length = 10 Apical loop length = 11 Insertion in stem2 = 0, 0 Free Energy = -25.34 ..(((((((................(((((((((((((((................)))))))))))))))........))))))).. model uucggucaugcg---------UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(({(((((((.............{[[{((((({(((((.........-----..)))))})))))}]]}----.)))))))})).. target CGGGAGGGCAGACUUGCUGCCUCCUUGACGUCUUUGCUCAGAGCCGCCA-----GGUGAGCCAAGACCGAC----CUCUGCCCACCAG **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = NW_018329262.1:subseq_1751320,83039_ Strand = + Positions = 43287 - 43364 Found by: Infernal (score=11.89) Stem2 length = 7 Apical loop length = 24 Insertion in stem2 = 0, 0 Free Energy = -16.86 ..(((((((.......(((((((((((........................)))))))))))...........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuugggguggg-ccaggcCuGAUGuu--u-uuucaugaccggc .((((((((---(...{[[((((((((........................))))))))]]}.......-..))))))))). target GUCUCUGUG---AGUAUGAAGCCCUUAAUCUGCUUGAGCUGCCAUGGCAUCUAGGGGUUGAUCACAUGG-GGUCACAGGGAG **** ****