------- SECIS element -- id:1 -- grade:A ---- Chromosome = NW_018336176.1:subseq_3339632,73466_ Strand = - Positions = 28878 - 28808 Found by: Infernal (score=40.73) Covels (score=31.65) Stem2 length = 11 Apical loop length = 10 Insertion in stem2 = 0, 0 Free Energy = -20.72 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(((({((.......{[[{(((((((((((........-----..)))))))))))}]]}..--....))})))).. target CCCAGCAGCCGCCCCAUGAUGGCUGGAUCUGAAAGCUUA-----GGUGGAUCCAGCUUGAUGU--CUUUGCAGUUGCU **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = NW_018336176.1:subseq_3339632,73466_ Strand = + Positions = 54827 - 54900 Found by: Infernal (score=11.35) Covels (score=3.22) Stem2 length = 8 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -25.32 ..(((((((.......(((((((((((((((...................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc (({((((((.......{[[{{((((({(((------((...........)))))})))))}}]]}..--....))))))})) target GUGAGGUGGCUGAGCAUGAAUGGGCUUCUU------CCCCCAGGUUAGAGGAAGUGGCCCCCGAUGC--UACACUACCUGGC **** ^^ ****