------- SECIS element -- id:1 -- grade:B ----
 Chromosome = NW_018334876.1:subseq_1100528,248379_ Strand = - Positions = 244518 - 244449
 Found by:  Infernal (score=10.78)
 Stem2 length = 8   Apical loop length = 17   Insertion in stem2 = 0, 1
 Free Energy = -12.03

         ..(((((((.......((((((((((((.....................)))).))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggcca-ggcCuGAUGuuuuuucaugaccggc
         ((((((((((--....{[[{((((((((.................----))).)))))}]]}..--..-))))))))))
 target  UUGAGCUAAG--AGUAUGAAAUCAGAAGACUCAGGGGUGUAUAUA----CUUCCUGAUAGAUUU--CA-CUUAGUUUAG
                         ****                                      ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = NW_018334876.1:subseq_1100528,248379_ Strand = + Positions = 228294 - 228362
 Found by:  Infernal (score=10.14) Covels (score=8.94)
 Stem2 length = 9   Apical loop length = 12   Insertion in stem2 = 0, 1
 Free Energy = -9.4

         ..(((((((.......(((((((((((((((...............))))))).))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca-ggcCuGAUGuuuuuucaugaccggc
         ...((((({---(...([[((((({(((((.........-----...)))))}.)))))]])..--...)})))))...
 target  UCCCCUGAC---UCAAUGAAGGGGCAGAGCAAAGCCUAC-----UGCGUUUUCUUCCUUGAAUA--UGUGCUCAGGCAG
                         ****          ^^^                         ****                 

------- SECIS element -- id:3 -- grade:C ----
 Chromosome = NW_018334876.1:subseq_1100528,248379_ Strand = - Positions = 768 - 684
 Found by:  Infernal (score=10.07)
 Stem2 length = 8   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -8.9

         ..(((((((..........(((((((((((((((.....................)))))))))))))))........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcC------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ((((((((((.........([[{{((({{(({(((((...............)))))}))}})))}}]])..--...))))))))))
 target  UUUGGAUAUACGUCUUCCAUGAUACUGCAGCCUGAAACCCAUCCCUAGUUGUUUUCAAGCCCUGGAUGAACG--CUCUGUAUUCGAG
                            ****            ^^                             ****